FMO09548.5prime Sequence
710 bp (710 high quality bases) assembled on 2010-10-13
> FMO09548.5prime
CAGTCGACATGATAGTGTTTCCGATTGTTTGTTCCAGAAGCAACACACAT
ATGGACTGGCCCTGTAGTGGATTGTGTACCCAACACAGCCAAACAAACAG
TGAGGCAATCACCCTTCGAAATGGGCCAAAAGCACACCAACACCAGTGCA
GCAGTGCATGCACTCGATGGCTGTGTGTGCGTGTGAAAGTAGTGAAAGCT
GAAAGCCGAGGGCGAACGGGGCCAATACTTATGCTTATGCAAGGCAGCCG
AGATGCCGAGATGCCGACGCCACCGCCCCAAAGGGAGGCCAAAAACGGAA
AACAGGCGACATTCATCGCAGGACGTGAAGTGTTCACTGTACTTTGGGAG
CGGAGGATAAGTCAAGACGTCAACAGAGGAAGCTGTACGATGTTCGCCCC
CCACTCGCTGCCCGTGACGTCACGACTGTTGCTTCTGGTGGTGACACTGC
TCTTCTGCCCCGTGCAGGCGCATCTCTCGAAGCGAAGCTACTCGGATCAG
AGTGTCCACGGCTACATGACCGAGCGCACCTGCTGGTGGAACGAGGTGTG
TAAGGAGGAGTTCCAGAGCCTCTTCCGCTGCAAGTGCCCCCAGTTCTCCT
ACTGCCGCTCGCCGGGACGCTACTACAATGCCTACTGCTCGATGACGGAT
ACCGGTTATATTTGGACCCAGCCGAACTGGGATTGGGGGGCGGCAAGCTT
TCTAGACCAT
FMO09548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St3-RC | 2062 | CG44167-RC | 959..1598 | 53..692 | 3200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23686538..23686877 | 53..392 | 1700 | 100 | Plus |
| 2R | 25286936 | 2R | 23687032..23687164 | 392..524 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 23687431..23687516 | 607..692 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 23687232..23687316 | 523..607 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 23685850..23685894 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:37:52 has no hits.
FMO09548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:24 Download gff for
FMO09548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11293-RA | 1..456 | 237..692 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:41 Download gff for
FMO09548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St3-RD | 164..855 | 1..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:11 Download gff for
FMO09548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St3-RC | 959..1598 | 53..692 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:11 Download gff for
FMO09548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23687432..23687516 | 608..692 | 100 | | Plus |
| 2R | 23685842..23685893 | 1..52 | 92 | -> | Plus |
| 2R | 23686538..23686877 | 53..392 | 100 | -> | Plus |
| 2R | 23687033..23687164 | 393..524 | 100 | -> | Plus |
| 2R | 23687234..23687316 | 525..607 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:41 Download gff for
FMO09548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19574955..19575039 | 608..692 | 100 | | Plus |
| arm_2R | 19573365..19573416 | 1..52 | 92 | -> | Plus |
| arm_2R | 19574061..19574400 | 53..392 | 100 | -> | Plus |
| arm_2R | 19574556..19574687 | 393..524 | 100 | -> | Plus |
| arm_2R | 19574757..19574839 | 525..607 | 100 | -> | Plus |
