FMO09550.5prime Sequence
1137 bp (1008 high quality bases) assembled on 2010-10-13
> FMO09550.5prime
CAGTCGACATGCCAGAAAGCCACAGTTACAAACTGAAACGTCTAACGTCA
ACAACAAGACAGCAAACTAATACCAAAATGGTCCTAAGCAATTCCACGCC
GAACAACCAGTCCAAGCACAACCAGATGGTAGTGGACACGGCAGCCATGA
ACAGTGATGATCTCAGCGAGCTACTGCAGCTGAACGCGGAGATCGAGGAA
CGTCGTCGCTCCAGCCGCCACGGAGATGCCAGCACCGCCTGTGGCCTGCT
CCGAGCTACGATGACCAGGGAGGAACTCTTCGAGATTTCCTCGCTGGATG
ATGATCGCTTCCTGACCGCCCTGGAGTACCAAAACTCGTTTGCATCACCG
CGCCGAGTGCAGGTTACCGACCTGGACTTGTCCAGCATCGAGAATCTGAT
GAAGTACTTCGACGAAGAGGTACCTGTGACGCCAACAAAGACACTGGGTA
CCACCAAGGCAGCGGGTAACACGGGTAAAGTGGCCAGCACAATTGCCAAG
TTGGCCCTCCAGTCGGATCCGGTCACGCCGCCCAAGCCAAAAGTGGGTAG
TGGCCACCTAAAGATCAGCGAGCTCAAGCAGAAATACGAACAGCTGCCGG
AGATGGAGACGCCACGCTCTGCATATCAGGCTTCCAGAAAGGTATCCGCG
TCGCTGCCCATGAAGGTCAAGGAGATGGCCCAGCTGTTTAACTCCAAGAT
CAGCCAGGTGATGCGACGTACAGAGGAACCACAGTATGTTCAGCTGCAAA
ATGAGATGTCGCCGGAGGTTAAGGCACAGAACCGCCTGGTGTCGCCATTA
GAGTCCCCAGTTCAAGGACCCTGCCTGGTGGCCGAGGAAGTTTTCGCGAG
TTGAGCGTGAAGGACAAAGCCCTGCTGTTCAACAAGTTCATCGGTGACAT
GGCAGCCAAGCACCCAAGTTCACTGCACATGCCGCAGATCTCAAGGAGAG
TAAACCAACAGGTGGCACGAGGGGAAGGTGGTGCCTGAACGACAAGCCAG
TGTTAGCATCTCGCCAGAGTTGGAAGCGAAATGTATCCTGGAGCGGATCG
CCCACCGCGAACAGGTGGTGTTCTCCTTCCCCCAAGAACGAACTGAAAGC
AAACGGAAACTGCACCCTCCCAGCCTGCCATGGTGAA
FMO09550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slam-RB | 4117 | CG9506-RB | 407..1526 | 9..1124 | 5115 | 97.9 | Plus |
| slam-RC | 3704 | CG9506-RC | 1..1113 | 16..1124 | 5080 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6373508..6374577 | 9..1071 | 4855 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:47:34 has no hits.
FMO09550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:53 Download gff for
FMO09550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slam-RB | 373..1470 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:34 Download gff for
FMO09550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slam-RB | 400..1497 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:43 Download gff for
FMO09550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slam-RB | 400..1497 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:43 Download gff for
FMO09550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6373501..6374598 | 1..1096 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:34 Download gff for
FMO09550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6373501..6374598 | 1..1096 | 97 | | Plus |
