FMO09552.5prime Sequence
698 bp (698 high quality bases) assembled on 2010-10-13
> FMO09552.5prime
CAGTCGACATGCGACCCTGGATCTTGACATCCTTCACCGGGGTGGGGACC
AACTTTTGCTCCGGGGTAGGAATGGCTGTGGCGGCGGCCACGGCCAGAGC
CAGGAATACGAACCTCGAACGCGACACCATGTATTTGCTTGTGAACTTCA
TCGTTGCGCTGGCCGTGCTGCAGGTGCAAGCCGGCTCATCCTACATTCCG
GACTCGGATCGCAACACACGCACCCTGCAGAACGATCTGCAGGTGGAGCG
GGATGGCAAGTATCGGTATGCCTACGAGACCTCCAATGGCATTTCCGCAT
CGCAGGAGGGATTGGGTGGCGTGGCCGTACAGGGCGGCAGTAGTTACACA
TCACCCGAGGGCGAAGTAATTAGTGTGAACTATGTGGCCGATGAGTTTGG
CTATCATCCCGTGGGCGCACATATACCCCAGGTGCCGGACTACATACTGC
GCTCCCTGGAGTACATTAGGACGCATCCCTACCAGATCAAGGACTACTAC
ACCGGGGAGCTGAAGACCGTGGAGCACGATGCAGCCGCCTTTAATGTGTA
CACACGCAACATTCAGGATCATACGATCCCCCAATCCCGACCGAGCACCA
CGCCCAAGACCATTTACCTCACCCATCCGCCCACGACCACGTCGCGACCT
CTGCGCCAAAGACGAGCTCTTCCGACGCACGCAAGCTTTCTAGACCAT
FMO09552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pcp-RA | 718 | CG3440-RA | 19..585 | 114..680 | 2835 | 100 | Plus |
| Jon99Fii-RA | 913 | CG2229-RA | 34..138 | 113..9 | 525 | 100 | Minus |
| Jon99Fi-RA | 933 | CG18030-RA | 36..138 | 111..9 | 485 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7021798..7022337 | 141..680 | 2700 | 100 | Plus |
| 3R | 32079331 | 3R | 30487791..30487895 | 9..113 | 525 | 100 | Plus |
| 3R | 32079331 | 3R | 30488998..30489100 | 111..9 | 485 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:47:44 has no hits.
FMO09552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:54 Download gff for
FMO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcp-RA | 13..585 | 108..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:37 Download gff for
FMO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcp-RA | 13..585 | 108..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:47 Download gff for
FMO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcp-RA | 13..585 | 108..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:47 Download gff for
FMO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7021700..7021726 | 114..140 | 100 | -> | Plus |
| 2L | 7021798..7022337 | 141..680 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:37 Download gff for
FMO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7021700..7021726 | 114..140 | 100 | -> | Plus |
| arm_2L | 7021798..7022337 | 141..680 | 100 | | Plus |
