FMO09554.5prime Sequence
1136 bp (1032 high quality bases) assembled on 2010-10-13
> FMO09554.5prime
CAGTCGACATGGGTTTATTACAAAAGTTGCGGAGGCAAATGTTGACAAGC
GTTAACCCCAGAAAGGTTGAAGGTCGAAAAACTATAAAGTTCAATCTCGT
TGCGAAAAGCAAAAGTCACTCGGGCATATCAGCACCCATCGGCCTTGGCC
CCCAGCTACCACCCCTTCCCCTCGGCGGCGGTTTTGTTAAGTTGCGTCAT
GTAGCCAAGGAGGAGGATACCAGTAGCAGCAGCAACACATCCTCCGCCAA
GGAATCGCCAGATAAGAAGGATCTTCGCCAGGAGCAGGCAGAAGCTTCGG
GAGACTCATCGCACCCAACGGCTCTGCCACAGTTTCTTCAAGGCGTCCAA
CGATCATCAACCGAGGTCATGGGCCCCGATCAGCGGTCTTTGGTGATTTC
GAAGACCGGCTCCATTGCGGAGCGTTTGGCGGCACTCCACAAAAGTGGCG
AGGACGACTGGAAGAAGCGCATCTCGAAGCGCGACGAAGTCGACGATGTG
CACCGTGAAAACTTCGTAAACGAATCGCTATCTTTGGCCCACTCGCTGTC
GGACAAACCACTGCCCCCATCACCTTTGATACCCACCAGCTTGGAGGGCG
GCAAGGTCTCCGATCGTTTGAGCAAACTCAAGTGCAACTCGGAGAACTGG
AAGCAGCGCATAGAGCAAACCGATGCCAAGAAATTCACAGTCGCCGGTCG
ACTGCAAAAGAAGGCCCAATCCCCCGTGGAGCTTCAATTCGAGCGTTCTG
CCAATGATGCGGCCAAAAAGTGTCCCATGCTGGAGGTGCGCAGCGCCAAT
CAGCCGCAGCTTGGGCTGGCCAAGAGCCCCTCCATGATGGTCACCTCTAG
CACCAGCACCAATAGCACCAGCAAGTCCGCACTCCGCAGCCTGAGCGTCA
ATCCCGAGGAGGAGGGACCCACCAGCCTGAGTCGCTCCAACAGCAGCAGT
TCGGAGTCCGATGGAAGAGCGCAATCCCCCAGGATTGCCAAGCAGAACAA
GGAGCTGGCCACAACAAGAGTGCTGCAGCACCCACAATGTGGGAGCCAGG
ATTCAAGTGCCCCGGGCTGGACGACAAGAAACTTCGGACTTCTTCTTCTC
CAAGCCGAGAAGAGGGAAACGTCAGCTGGAGATTCA
FMO09554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45186-RZ | 4447 | CG45186-RZ | 118..1168 | 91..1133 | 4860 | 98.2 | Plus |
| CG45186-RAE | 14937 | CG45186-RE | 10609..11658 | 92..1133 | 4855 | 98.2 | Plus |
| CG45186-RY | 4738 | CG45186-RY | 410..1459 | 92..1133 | 4855 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2495217..2495634 | 662..1078 | 1790 | 97.9 | Plus |
| 3L | 28110227 | 3L | 2484564..2484839 | 92..367 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 2485071..2485229 | 364..522 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 2495011..2495152 | 522..663 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 2480744..2480812 | 23..91 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:47:53 has no hits.
FMO09554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:55 Download gff for
FMO09554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33232-RA | 1..1122 | 22..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:41 Download gff for
FMO09554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33232-RA | 1..1122 | 22..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:49 Download gff for
FMO09554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45186-RZ | 115..1169 | 86..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:49 Download gff for
FMO09554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2495011..2495152 | 522..663 | 100 | -> | Plus |
| 3L | 2484564..2484837 | 92..365 | 100 | -> | Plus |
| 3L | 2480742..2480812 | 20..91 | 98 | -> | Plus |
| 3L | 2485073..2485228 | 366..521 | 100 | -> | Plus |
| 3L | 2495219..2495697 | 664..1135 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:41 Download gff for
FMO09554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2480742..2480812 | 20..91 | 98 | -> | Plus |
| arm_3L | 2484564..2484837 | 92..365 | 100 | -> | Plus |
| arm_3L | 2485073..2485228 | 366..521 | 100 | -> | Plus |
| arm_3L | 2495011..2495152 | 522..663 | 100 | -> | Plus |
| arm_3L | 2495219..2495697 | 664..1135 | 95 | | Plus |
