FMO09555.5prime Sequence
1132 bp (1017 high quality bases) assembled on 2010-10-13
> FMO09555.5prime
CAGTCGACATGAACAGCTTAGTGCGACGCAGCGCCCAGCAGCTGAGCCTC
TGGCGTACATATTGCATAAAGCACAATGCTTCAGAGGCGGCTTCTCCCGG
ACGGAACGCAGGCAGGCCCAACTACGAGGAGTTCATTGGCCGTCATCAGC
GACAGGCCCAGTGCAGCATTGTGGTCCAGGTGAGCTCCGAAAAGTCGTAT
GAGGAGTTGTATAACTACTGCAGCAGCTTCGGCTCGATCATGGGTGCCCA
CCACTACTGCGTGCGGCAGGACGAGGCCCTGCACTACATCCTGCTGGAGT
ACGCCACGTCGGACGAGGCGGCGGCTGCCATCGGAGCGGGCGTTACCAAT
GGCGAGCTGAGCGGCGTGCCCGTGCGATCTCCCTTTCTGTGGTTCCGGGC
AGCGGGAGGAGGCAGACGGAGCCCCAAGCTAGTTGCCAATACAGCGCCCG
CACTGCTATCCTTGGACGGCACCCGGCAGGTGGATCAGCGCCACCTACTG
GGGCTCTTACGTGGTGCAGCGGACATCGAAGAGCAGGTGCAGCAGCTGTA
CGAGCACACGCGCCTGAATGAGCTGGGAATCCGTATGCGCTTTCTAGCCG
CCCTACAGGTGCAGCAGGCCATTGCCGGCATGTTTCCCGCCGCCCAGGCA
CAGCCCTTTGGCTCGTCGGTCAACGGATTTGGGCGAATGGGCTGCGACCT
GGACCTCATCCTGCGCTTTGACAGCGATATGGGAGCTAAGATCCCACTGG
AGGCGGCGGTGCCCTCGCGACTCGTGTACCACACCAAGGAGAACCTGAGC
AACGGACGCTCGCAGACGCAAAGGCACATGGAATGTTTTGGAGATATGCT
GCATCTGTTCCTGCCCGGCGTGTGCCATGTGAGACGTATTTTGCAGCGAG
GGTGCCCATCATCAAGTACCACCATGAGCATCTGGACCTGGAGGTGGACC
TCTCCATGAGTAACCTCACTGGCTTTTATATGTCGGAACTGCCTTTACAT
GTTCGTGAAATGGATCCGCCGCCGTACGGCCGTTGACCTTTACCAATTCG
GCGCCTGGGCGCAGACCTGCGTCCTCACGATCCCTCGCTATCGCTGAATC
AGCACTCTCGCTCACCTGCTGTCAGGTTCTCT
FMO09555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11418-RC | 2243 | CG11418-RC | 111..1224 | 8..1119 | 5235 | 98.6 | Plus |
| CG11418-RA | 2319 | CG11418-RA | 111..1224 | 8..1119 | 5235 | 98.6 | Plus |
| CG11418-RB | 1374 | CG11418-RB | 125..279 | 966..1119 | 480 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1348222..1349080 | 966..109 | 4230 | 99.8 | Minus |
| X | 23542271 | X | 1349143..1349247 | 112..8 | 525 | 100 | Minus |
| X | 23542271 | X | 1346011..1346120 | 1080..967 | 280 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:47:57 has no hits.
FMO09555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:56 Download gff for
FMO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 102..1238 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:43 Download gff for
FMO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 102..1238 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:52 Download gff for
FMO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11418-RA | 102..1238 | 1..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:52 Download gff for
FMO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1348222..1349077 | 112..966 | 99 | <- | Minus |
| X | 1349144..1349250 | 1..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:43 Download gff for
FMO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1242255..1243110 | 112..966 | 99 | <- | Minus |
| arm_X | 1243177..1243283 | 1..111 | 96 | | Minus |
