FMO09556.5prime Sequence
1107 bp (1007 high quality bases) assembled on 2010-10-13
> FMO09556.5prime
CAGTCGACATGAGTGTCTGGATGAGCGGGCCCCGAAATTTCGCACTAGCC
ACACAAATTATACGGGAAACTATGAGTTTGCACTACGCGGAATCGGAATC
TTCGCCGTCAGAGAGCAAAATGGACATCTCGGAGACGCCGACGGACTCAA
CGGGCGTCTCGCCGCTGGCGGATGATGTTTTGCCCACCGCGCCGGAGAAG
AATATCCTGAAATTGGAGCAGGCCAAGCAGGATCACGATAAGGAGGAACT
GGAGTTCAAGACGACCTCCGCGCTGGACAACAGAATACTGCGTCCAGAGC
TGCTGCCCATGGAGGCGATGCCACAACGACACAACATCATCGAGCGCACC
CTGGCCAACAGCCATCCGCTGATGTCGCCAACCAACACGGACTCAGACTC
GGAACCCTTTCAGCTGAAGAAGCAGGAGAAACAGCTGCCGAGGAGCAACT
TTCCGGACGTTGTGCCCACCACGGAGACGGTGCAGGTGAAGAACAACCTG
AACCAATGCCGGAACAAGCCGCAGGACGCCAAGGTCAGCCTGCTAAGGGC
CAACAGTCCGGATATCCTGAGCAGCGAGTCAGATGCGGATGTGTCCCAGT
ACTTGGCCGCCGTGGAGTCTAACTTTCAGTCCGTTTCCCTGATGCCCAAT
GGCAATGGCAAGAAATCCAAACGATCGACTGCACTCCCTGGTGGCGAGGA
CATATCTAGCCTGGATTCCATCTCCAATCACAGCTTCGACGATGACGAGG
ACATTGAGCACAATTTGGCCTCTCTAAGTCCATCGAGCTCCCTGATTGAT
GGCTTAGACGGAGAGGATGACGACGACGACTGCGAGGGTCCGGAACTGCT
GCCCGACCACGACGACGACTTGGAACTGGACCTGAGTTCGGTTTGGCCAC
CACGCCCACGCCAAATGCTCCGGCATCGGCTACGCTGCCTCAACTCTGCC
ACAGTATACGCTGCTGAAGAGAAAACGTGATCGCGGAATTGGCAAAAAGA
ATCACTTTACCGGATGGACGCACTAAGGAGAATCGAACATGGCGGGTCTT
AGAGCCTACAAGCGGTGTGCTGTTCCACGGCGGCTTATCTCAATCTGGCG
GTCAGAA
FMO09556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11593-RC | 2582 | CG11593-RC | 129..1225 | 9..1107 | 5070 | 98.1 | Plus |
| CG11593-RB | 2773 | CG11593-RB | 320..1416 | 9..1107 | 5070 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4039003..4040033 | 1107..75 | 4420 | 97.1 | Minus |
| 3L | 28110227 | 3L | 4040096..4040163 | 76..9 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:48:01 has no hits.
FMO09556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:57 Download gff for
FMO09556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11593-RB | 313..1414 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:45 Download gff for
FMO09556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11593-RB | 313..1416 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:54 Download gff for
FMO09556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11593-RB | 313..1416 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:54 Download gff for
FMO09556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4039003..4040031 | 77..1107 | 97 | <- | Minus |
| 3L | 4040096..4040170 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:45 Download gff for
FMO09556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4039003..4040031 | 77..1107 | 97 | <- | Minus |
| arm_3L | 4040096..4040170 | 1..76 | 94 | | Minus |
