FMO09558.5prime Sequence
1134 bp (1029 high quality bases) assembled on 2010-10-13
> FMO09558.5prime
CAGTCGACATGGCGAATAAGTGCCGCTGCGGTGCAGAGGTCCTGGGCGGA
GAAAACAGAGGTGTTTTCTGCGAGGGTCCCTTGCTGGATGCTGTCCAGAG
ATCGAAAATGTTTCCCGACTGCAAACACTTTGTGGACATGAGCTGCATTT
TTACACCTGCCCAAACTTTGGCCGACTTCGATATGTTCACCAATTGCCGC
AGAAACGATGGATCTCTAAGGTTCCTGCAAATGTTTGTCGAGAAGCACTT
CAATGATCCTGGCTCGGAGCTGGAACACTGGACACCGCCGGATTGGAAAG
CACAGCCTTCGTTTCTTGCCAGGATCTCTGACCCGGAAATAAAGCAGTTC
GGTTCGGATGTCAATGGACTTTGGAAGGAGTTGGGGCGGCGGATTAAGGA
TGAAGTCAAGGAGAACCCCGATCAGTATTCCATTATCTACGTACCGAATC
CTTTCATTGTTCCCTCCTCAAATTGCCGCGAGTACCGCTACTGGGAATCG
TTTTGGATCATTCGCGGCTTGCTGCAATGTGGCATGCATCAAACAGCCCG
GGGCATGATCGATAACTATTTGGAATTGGTTCAGCAGTACGGCTTTGTGC
CTGGTTGTGGCCGGATATACTGCTCGGGTCGATCGAACCCTCCACTCTTG
ATCATGATGGTAAAGGCATATGTGGAGGTGACCAAGGACGAGCAGTACGC
CATTGAAGCTTTGCCGCTGCTGGAAACCGAATACGATACCTTCATCAGCA
AGCACTCGGTGCAGGTGAAGGGCAGGACCATGTATCAGTATCGGGATTCC
TCGGCAGGACCCAGGCCCGAGGCCTATCGAGAAGATCTGGAGTGTGTGGC
AAGCATCAAGAGTCCTGTGGTCCGAGAGGTTATGTACACCGAACTCAAGT
CGGCTGCTGAATCGGGTACGAACTTCAGTTCACGCTGGTATGTGACCGTC
GATGGTTCCATAAAGGATCCTTTCGAGACATCAAAACATCTGCCATTGGT
GCCCGTGGAGCTGACTGCATTGTTTCCGGATGGCAGATTCTTGGCCGAGT
TATCCGCAAAGCGGCATACGAAAAGGCGATGGTATCAGATAGAGCATGTG
TTCTAGTAAGCAATCCGATATTTATGATGCCAGC
FMO09558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6262-RA | 3398 | CG6262-RA | 124..1234 | 9..1109 | 5150 | 98.3 | Plus |
| CG6262-RB | 3417 | CG6262-RB | 124..1253 | 9..1109 | 4950 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16360241..16361026 | 241..1025 | 3785 | 99.6 | Plus |
| 2R | 25286936 | 2R | 16359969..16360154 | 57..242 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 16359853..16359902 | 9..58 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:47:20 has no hits.
FMO09558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:51 Download gff for
FMO09558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6262-RA | 116..1241 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:26 Download gff for
FMO09558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6262-RA | 116..1241 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:38 Download gff for
FMO09558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6262-RA | 116..1241 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:38 Download gff for
FMO09558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16359971..16360154 | 59..242 | 100 | -> | Plus |
| 2R | 16359845..16359902 | 1..58 | 93 | -> | Plus |
| 2R | 16360243..16361128 | 243..1120 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:26 Download gff for
FMO09558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12247350..12247407 | 1..58 | 93 | -> | Plus |
| arm_2R | 12247476..12247659 | 59..242 | 100 | -> | Plus |
| arm_2R | 12247748..12248633 | 243..1120 | 97 | -> | Plus |
