Clone FMO09559 Report

Search the DGRC for FMO09559

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:95
Well:59
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09559.5prime Sequence

401 bp (401 high quality bases) assembled on 2010-10-13

> FMO09559.5prime
CAGTCGACATGTACAATAGTTTATATTTATATCGAAATCTGTGCAAAATG
TCGTTTGTTCCAGAGACTTTTATTATTTATGGCTTTTTATGGAGCTTGGT
GGTTTTCCCAGCTTTCGCTAATTTTTCCCTCTACAACTACGGGGATTCAG
CCTATCCCAATTGCTGTGTTCTCGATATTGACTCAACGCGGATACTGCTT
AAAATGGGTCAGAAATTTCGCCCAAAATTCCTGCCCTGCACGACAATTTT
ATGCATTGGCGATGGATATGGAATGCTGTTTACGTGTGATAAAAAGGAAC
CACCAGAGCACTGTCACTTTAAGGATTATTTGAATGGGGATGCCAATTAT
CCAGATTGTTGCTACCGCAAACTTGAGTGCGACGCAAGCTTTCTAGACCA
T

FMO09559.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG34178-RC 492 CG34178-RC 14..388 9..383 1875 100 Plus
CG34178-RB 940 CG34178-RB 462..836 9..383 1875 100 Plus
CG34178-RA 882 CG34178-RA 404..778 9..383 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4434428..4434569 9..150 710 100 Plus
2L 23513712 2L 4434616..4434755 146..285 700 100 Plus
2L 23513712 2L 4434854..4434953 284..383 500 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:47:23 has no hits.

FMO09559.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:51 Download gff for FMO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34178-RA 397..790 1..396 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:28 Download gff for FMO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34178-RA 397..790 1..396 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:39 Download gff for FMO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34178-RA 397..790 1..396 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:39 Download gff for FMO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4434421..4434569 1..150 97 -> Plus
2L 4434621..4434753 151..283 100 -> Plus
2L 4434854..4434965 284..396 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:28 Download gff for FMO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4434421..4434569 1..150 97 -> Plus
arm_2L 4434621..4434753 151..283 100 -> Plus
arm_2L 4434854..4434965 284..396 96   Plus