Clone FMO09560 Report

Search the DGRC for FMO09560

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:95
Well:60
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09560.5prime Sequence

595 bp (440 high quality bases) assembled on 2010-10-13

> FMO09560.5prime
CAGTCGACATGCCTTTCCGGGCCGAACACAAGGCAGAGGACGAGAAGGTG
CAGATCACAGGTCCGGAGGACAACCAACACCAACAAAACAACAACAACAA
CGATTGGGAGCCGAACAGGATGGTGCTACCGTTTGGACTTGGACCCGATG
GCCATCACGTGGATGCCATTCAGAGTGCTCCGGCGCCCAGTGCGCCCCCC
GCCCACATGATGCCACCAGCCTACGCCCGGGGACAAACAAACATATACAC
AGGTGTTCCGATCATCGTGAATCCCTACATAGACTTCATCGTGGTCAACG
GGGATGATCGATACATGATCAGATGCGAACGAAAGTCGGTACTCGAGCGG
AGCGTGGAGCTGGCCAAGCTTATCCTCTTTCTGTCCGAACAGCGGTCGCA
AGAGCGACAATCATTTCCAGATACTCAACGTGGACAAGAACGACTTTGTG
CTGATCGTCCGCTACATGGAGAAGCACTTCATTCCCTACCGCGATCACAA
GCACCTGCTCAGATACTGGAGCTTTCCGATCGCTTCAACGTTCCAGTATC
TGATAATCTTACTTGCATTCGCGAACCTTGATTCTCAGAATTCCT

FMO09560.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8398-RE 1911 CG8398-RE 329..884 31..591 2530 97.5 Plus
CG8398-RD 2094 CG8398-RD 512..1067 31..591 2530 97.5 Plus
CG8398-RC 1850 CG8398-RC 268..823 31..591 2530 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6616076..6616591 31..546 2380 98.3 Plus
Blast to na_te.dros performed on 2014-11-26 14:47:27 has no hits.

FMO09560.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:52 Download gff for FMO09560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8398-RD 766..1321 33..595 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:29 Download gff for FMO09560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8398-RC 268..825 31..595 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:41 Download gff for FMO09560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8398-RC 268..825 31..595 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:41 Download gff for FMO09560.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6616078..6616596 33..552 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:29 Download gff for FMO09560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6609178..6609696 33..552 98 -> Plus