FMO09566.5prime Sequence
1114 bp (999 high quality bases) assembled on 2010-10-13
> FMO09566.5prime
CAGTCGACATGATCGACGAACACCATCCCATGCAGATCGGAATGTTTCCG
ATGGACATAAAATGTCAACAGCAGCAACTGGGTGCTGGCCAACTGCCGCA
AACTGGGGGCCTCAATCAACTGCTGCTGTTGAACGGAAATGAACGCATGT
TAACAACACCAACGACAGCAGCAACATCGGTGGTGGTGGCAGCCGGAAGG
AGTGCGAGTACCAAAGCCGGAGTAGCCCACAATGACAAAATGGCGTCAGT
CAGCAGAACTGTCAACGGAAGTTGCAGTAACCACAACAGCAGCAACAGCA
GCAGCAGTAGCAGCACCAACAGCAGCAGCAACATGGCCATAAACAAGCAA
CCGATGGGCATGGGACCGGGCACAGGAACCGGAATGGGAACAGGAACAGG
ACATGGTCCAGGACCACCCAACCATACACACTGCAACCGCATCACTTTGG
GCGAGTGCAGCCTCAATGGAATGGACGGCTTTGCAACGCCGGCAGCACCT
CCATCGGCATCCAACACACCGCAAGCGCCTCTGGGAATGGCCTCCAATTC
CGGCATGGGCATGGAACTGGGCCTGGCCATGGCATCGCCGCAGCTGAGCC
AGTGCGCCCACTGCTGCCAGCCCATTTGCGATCGCTACATCATGCGCGTG
GTGGAGAACTCCTTCCACGAGGGCTGCCTCAAGTGCACCGCCTGCTCGCT
GCACCTGGTCCACTCCTGTTATGCGAGGGAGGGCAAACTCTACTGCCGCG
TCGACTACGAGAGACTCTACATCCGCAATCATTGCCTTGGCTGTGGCCTT
AAAATCGCCGCCGATGAGCTGGTGATGCGATGCCACGAGAACGTCTTCCA
TCTAAAGTGCTTCGCCTGTGTGGTGTGTGGAGCTCTGCTGAGAATGGGAG
CAGTATGTGTCAAACAGGGGCAGCTCTTCTGCGTCTTCGACTACGAGAAG
GAGGTGGAGATGCTACAGGGATACGATTTCTTATGGCGATGAGCTTTTCC
CGCCCAAATAGACGGACGAAGAGGACCAAGCCGACGAGACATTCTAAAAC
GCAGCAAGGACGAGCTTTAGCTCTTCGAGTTCACCGACCGGTCAAGTGAG
AAGAAAATCTGCCA
FMO09566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4328-RB | 1968 | CG4328-RB | 254..1320 | 9..1068 | 5020 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12292250..12292967 | 763..46 | 3590 | 100 | Minus |
| 3L | 28110227 | 3L | 12291883..12292099 | 975..762 | 895 | 96.3 | Minus |
| 3L | 28110227 | 3L | 12291730..12291821 | 1068..982 | 190 | 88 | Minus |
| 3L | 28110227 | 3L | 12295834..12295870 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3568..3618 | 125..175 | 120 | 70.6 | Plus |
FMO09566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:03 Download gff for
FMO09566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4328-RA | 1..1025 | 51..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:44:04 Download gff for
FMO09566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4328-RB | 254..1320 | 9..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:11 Download gff for
FMO09566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4328-RB | 254..1320 | 9..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:11 Download gff for
FMO09566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12291883..12292097 | 764..975 | 97 | <- | Minus |
| 3L | 12292250..12292967 | 46..763 | 100 | <- | Minus |
| 3L | 12295834..12295870 | 9..45 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:44:04 Download gff for
FMO09566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12284983..12285197 | 764..975 | 97 | <- | Minus |
| arm_3L | 12285350..12286067 | 46..763 | 100 | <- | Minus |
| arm_3L | 12288934..12288970 | 9..45 | 100 | | Minus |
