FMO09570.5prime Sequence
807 bp (807 high quality bases) assembled on 2010-10-13
> FMO09570.5prime
CAGTCGACATGTCTGCCCAAGTGGAGAGCAATGGTGCCAGTGAAAGTAAT
AACAATTGCGTCAAGGATGTCAGGCTCCTGCTGCTGCCGGAGAATTCCAC
GGATTCGGATGGCAATCCGGCGAGTGTCGCATTCAGTGCGGAATCGCACA
TTGATGACCTGACACGAACCATTGACGTGGGCCATGTGAGGAGGAAGCGA
TTGTGGCGGGTGCCCTGGTTTATTTTGCTGATGAGTTTTGTGCAGATATC
TTTGCACTGGATAGCTAGTGAGTGTATGCAAAAAGTACTGATCTTCAAAC
CGGAATGGAACGTCGAGTACTGGCGCCTACTGACCTATATGCTGCTCCAT
TCCGATTACTGGCATCTGTCTCTCAACATTTGCTTTCAGTGCTTTATAGG
TATCTGCCTGGAAGTGGAGCAGGGTCACTGGCGTCTGGCCGTGGTCTATA
TGGTGGGTGGCGTCGCTGGTTCGCTGGCCAATGCCTGGCTGCAGCCCCAT
CTCCATCTGATGGGTGCCTCCGCTGGGGTCTACGCCATGCTGGGAAGTCA
TGTGCCGCACCTGGTTCTGAACTTTTCGCAATTGTCGCACCGCTTTGCCC
GCATCGCCTCCCTGCTGATATTGTTACTCAGCGATGTGGGCTTTACAACT
TACCACTTTTGCCACAATCACAATCGCAATCCGCGCACCAGTCTGGAGGC
GCATATTGGAGGGGGCGTGGCCGGAATTCTGTGCGGTTTCATCGTCTATC
GACGCCTGCAGCCAGCCAATCAAAACGCCATTTACTTTTGCAAGCTTTCT
AGACCAT
FMO09570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-6-RB | 944 | CG17212-RB | 73..862 | 9..789 | 3790 | 98.7 | Plus |
| rho-6-RC | 934 | CG17212-RC | 73..852 | 9..789 | 3630 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12130598..12130818 | 789..569 | 1090 | 99.5 | Minus |
| 2L | 23513712 | 2L | 12133094..12133339 | 245..9 | 1060 | 96.3 | Minus |
| 2L | 23513712 | 2L | 12130886..12131068 | 569..387 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 12131292..12131438 | 389..243 | 735 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 5936..5973 | 418..380 | 111 | 79.5 | Minus |
FMO09570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:58 Download gff for
FMO09570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 1..792 | 9..790 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:48 Download gff for
FMO09570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 22..818 | 4..789 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:56 Download gff for
FMO09570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-6-RB | 66..862 | 4..789 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:56 Download gff for
FMO09570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12130598..12130817 | 570..789 | 99 | <- | Minus |
| 2L | 12130886..12131065 | 390..569 | 100 | <- | Minus |
| 2L | 12131292..12131435 | 246..389 | 100 | <- | Minus |
| 2L | 12133094..12133346 | 4..245 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:48 Download gff for
FMO09570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12130598..12130817 | 570..789 | 99 | <- | Minus |
| arm_2L | 12130886..12131065 | 390..569 | 100 | <- | Minus |
| arm_2L | 12131292..12131435 | 246..389 | 100 | <- | Minus |
| arm_2L | 12133094..12133346 | 4..245 | 95 | | Minus |
