FMO09572.5prime Sequence
1129 bp (1048 high quality bases) assembled on 2010-10-13
> FMO09572.5prime
CAGTCGACATGCACCAAAGCAAACGCTCCAGCGAAATGTGGAATCAATAC
CGAAACCAAAACCGAAACAAAAACCAAAGTCAAGGATCCAGTGGAGTCAC
CCGTCGTCCAACGATGGGGCGGAACAAAGGAGCTGCCGCCGGATCACGAG
CACTCAACTGTGGCCTGTTGATGCTCCTGCTGCTCCTCCAGCTGGTGGGT
GAGCGCCTGGCGACGCCATCGCCATCCTCCATGCAGGCGCCACAGAAACG
AGGTGGCAGTGGCAGCGGAGGTGGAGGCGGCGGTGGAGGCGGTGGCAGTG
GCAGCTCGTCGGACGTATCGAGAGATCACTGCAACAAGACGGTGGACATC
TTCGAGGACATCAGCTCGCCGGAGGTCAGCAACCAGAACGTGGGTCGTCC
GCTGACCTGCTGGTACCGCTTCCGGACGCTGAAGGGAGCGCCCCGCGACT
TTGTGCTGCGTCTGCGATTCAAGAAGTTCAAAGTGGGTCAGCTGCTGAAT
GCAACCCACTGCGAGGGCGGCTACTTGCAGATTGTTGATGGCAATGCCAA
GACGGATGTCTCGAATCGCCGAGAGCCCGGAATGTTTTGCGGGGAGGCGG
AACAGCCGCAGACATTCATCAGCGAGACCAGCTATGTGAAGGTGCTCTTC
CACACGGACAACTTTACGGATCAGACCTACTTCACATTCGATTCACGCGC
GGAACAGCAAACCGAAGTCTATCTGCGATATGGCCAACATCCGGAATTAT
ATCCAAATCGTCGCGGCGAAGTTGTTCAAGGCTCCTACTGCGAACGCGAG
TATCGAGATTGTCGCCTGCAGACCTGTTACGTTCAATCGCCCGCATATCC
TGCCCTATATCCTCGGGCCCTGAATTGCCGCTATAAGCTGCACACTCGCC
AGCCATATATCAAATTGTATCTGCAGAATGAGCAGTTTGCAGTGGATGGT
CAAAGGTGTGAGAATGTGATGACCTGCCCATCAGCCGATCGGATCTGGTA
ATGAGCACTGTTCCCTACGACTGGTGGCCGTATACGATGGACGTGATGAG
CCCTCCCCCGCTCATGGGGAGTTCTGCGGCTGGGCAAGTTCCCATTCAGG
CATATTGCCAATCAAATTACATGTTATGT
FMO09572.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34370-RH | 4294 | CG34370-RH | 158..1292 | 9..1124 | 5100 | 97.2 | Plus |
| CG34370-RG | 4377 | CG34370-RG | 241..1375 | 9..1124 | 5100 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22004983..22005252 | 530..261 | 1305 | 98.9 | Minus |
| 2R | 25286936 | 2R | 22037390..22037635 | 254..9 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 21998799..21998975 | 957..781 | 870 | 99.4 | Minus |
| 2R | 25286936 | 2R | 22004708..22004857 | 674..525 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 22000700..22000809 | 781..672 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 21994963..21995111 | 1099..954 | 365 | 90.7 | Minus |
Blast to na_te.dros performed 2014-11-26 14:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 607..717 | 383..273 | 124 | 62.1 | Minus |
FMO09572.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:59 Download gff for
FMO09572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34370-RG | 240..489 | 9..258 | 100 | -> | Plus |
| CG34370-RG | 502..1368 | 259..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:52 Download gff for
FMO09572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34370-RG | 241..490 | 9..258 | 100 | -> | Plus |
| CG34370-RG | 503..1369 | 259..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:59 Download gff for
FMO09572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34370-RG | 241..490 | 9..258 | 100 | -> | Plus |
| CG34370-RG | 503..1369 | 259..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:59 Download gff for
FMO09572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22037388..22037635 | 9..255 | 99 | | Minus |
| 2R | 21994955..21995109 | 956..1107 | 92 | <- | Minus |
| 2R | 21998801..21998974 | 782..955 | 99 | <- | Minus |
| 2R | 22000700..22000806 | 675..781 | 100 | <- | Minus |
| 2R | 22004708..22004851 | 531..674 | 100 | <- | Minus |
| 2R | 22004983..22005257 | 256..530 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:52 Download gff for
FMO09572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17882460..17882614 | 956..1107 | 92 | <- | Minus |
| arm_2R | 17886306..17886479 | 782..955 | 99 | <- | Minus |
| arm_2R | 17888205..17888311 | 675..781 | 100 | <- | Minus |
| arm_2R | 17892213..17892356 | 531..674 | 100 | <- | Minus |
| arm_2R | 17892488..17892762 | 256..530 | 97 | <- | Minus |
| arm_2R | 17924893..17925140 | 9..255 | 99 | | Minus |
