FMO09573.5prime Sequence
1140 bp (1032 high quality bases) assembled on 2010-10-13
> FMO09573.5prime
CAGTCGACATGTTTTGGAGTCCAATTATGGGCGATAACTCCGGCGAATCC
GAATACGTCGAAAATAATAGTGTGTATAGTTCAATCACGAGGCTTTTAAA
ACTTTTAGAAATGGAGGAAATCTTCATAACGAACATTAAGGCATACACCA
ATAAGTTGGCCGAAAAAGTCAAAAATCTACAAGCTTATATCGACTCGGTT
GACTACGAATTCCAACAAAGTTTTGAAGATCGAGAGAAATATGTCGGTAA
TCCCATTAATGCATTTAGTCTAGTGAGACGGACACATCAAGATCTACCGA
AATGGCACAACTATTCACAGCAGATCGTGGGAATGGAGGAACTGTTTGCC
TTGGAGGAAATTATAGCCAAGGTACCGGATAAAAAGGATATGGCATATTC
ACTGGGAGAAATGCATCGGATTGAACAGATTTACGATTTGGAAGCCATTG
AGTTGGCAAGAGGTCGTATTCAGGGCAAGCAATATGACTTTCGGCCTTCT
ATTCGGGATTGTGTTGCTTTGGGAGAGCACAAATTTAAAAGGGAGGACTA
CCAACGGGCTTCTATGTGGTTTCGCGTGGCCATCAAACATGAGCCCGAAG
GAAATGCCGAGATTATCAACAGCATTCTTGGAGATCCCAAGGTTAATTTG
TATACTTTGTACGCCAAATCAATGCTCATATTCGGCATGATCAAGTCAAA
TCCTTCGATGACAATCGCAGAAGCTAAGAAAATATCCTACGAAGCTCTGA
ATAAGGCCAGCCTAGCAGATATAAAATCTCTCTTAAATGAGTTGCTAAGT
CAAACTGACGATGAAATTGTTTACGAAATGAATGTTAACAAGACAAAACC
CTCAGACTACGAAATTGGATGTCGTGCCCAGTTTCTTAGCGAAGGAATCA
TGTTTGCACCTATAATTTCACATAACCGAATTCTTGAAACTAGCTCCCTT
GAAACAGGAAGTTTTAAATTGGGATCCTTACATTGTCATTATTTCACGAT
GTTCTTATGACGACGAGATCGATAAGTTGAAAACACTGATGAACTGACGC
GGTGGAAGTCAATCCTATTGAAAACGCATCTTCACGCATAACGATTGAAC
CGACTAGTTGAACTCCGATCAACAATATATCCAAAACGGT
FMO09573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18231-RB | 1548 | CG18231-RB | 26..1172 | 9..1136 | 5170 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18608460..18608857 | 684..1074 | 1580 | 96 | Plus |
| 3L | 28110227 | 3L | 18608210..18608407 | 488..685 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 18607487..18607662 | 9..184 | 880 | 100 | Plus |
| 3L | 28110227 | 3L | 18607718..18607869 | 185..336 | 760 | 100 | Plus |
| 3L | 28110227 | 3L | 18608003..18608154 | 336..487 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:49:10 has no hits.
FMO09573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:07 Download gff for
FMO09573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18231-RB | 22..1127 | 4..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:44:18 Download gff for
FMO09573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18231-RB | 22..1127 | 4..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:20 Download gff for
FMO09573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18231-RB | 22..1127 | 4..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:20 Download gff for
FMO09573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18607483..18607662 | 4..184 | 98 | -> | Plus |
| 3L | 18607718..18607869 | 185..336 | 100 | -> | Plus |
| 3L | 18608004..18608154 | 337..487 | 100 | -> | Plus |
| 3L | 18608210..18608406 | 488..684 | 100 | -> | Plus |
| 3L | 18608461..18608886 | 685..1098 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:44:18 Download gff for
FMO09573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18600583..18600762 | 4..184 | 98 | -> | Plus |
| arm_3L | 18600818..18600969 | 185..336 | 100 | -> | Plus |
| arm_3L | 18601104..18601254 | 337..487 | 100 | -> | Plus |
| arm_3L | 18601310..18601506 | 488..684 | 100 | -> | Plus |
| arm_3L | 18601561..18601986 | 685..1098 | 96 | | Plus |
