Clone FMO09575 Report

Search the DGRC for FMO09575

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:95
Well:75
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09575.5prime Sequence

395 bp (262 high quality bases) assembled on 2010-10-13

> FMO09575.5prime
CAATCGACATGCCAGGGAGGCCAGAAAAGCCCATGGAGCTAATTAAGCCG
CCTCGCATGAATGCTGTGTGGTTTTCCACGGGGCCAGAGGTTGAGGGTGG
CTCTGCATCAAGGGAAAGCACTAACTGCAACATCAACATCAACAGCAACA
TTAGCAACAAGAGCAACAAAGATGAGAAATCGCTGGCTTCCTGGCTTCAT
GAAGAAATAAGTCTAGATTGCCAGTTGGGGAAAAACTTGTTCATCTTTGG
CTCTAACGAGCTAACGGAGCGACAAGCGGACAAGCGGACAAACAGCGGAC
CAACCGAACTGATGGGCGGACATTCCGGCGGACGGACGGACAACTGTGAG
CGATTCCACACAAAACAAGACGATGGGGCAAGCTTTCTATACCAT

FMO09575.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33284-RA 1132 CG33284-RA 539..907 9..377 1815 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21124291..21124659 9..377 1815 99.5 Plus
Blast to na_te.dros performed 2014-11-26 14:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2445 103..190 161 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6837 103..168 149 74.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2408 117..169 148 75.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6848..6954 103..213 139 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6846 103..168 138 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2362..2413 117..168 134 73.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6793 103..169 133 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6813 103..168 128 67.6 Plus
Dbuz\INE-1 1467 Dbuz\INE-1 ISBU1 1467bp 1254..1316 280..342 125 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6772 115..169 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2359 95..168 117 66.2 Plus

FMO09575.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:08 Download gff for FMO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33284-RA 1..348 33..381 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:44:21 Download gff for FMO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33284-RA 534..910 1..381 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:23 Download gff for FMO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33284-RA 534..910 1..381 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:23 Download gff for FMO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21124286..21124662 1..381 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:44:21 Download gff for FMO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21117386..21117762 1..381 97   Plus