FMO09578.5prime Sequence
1117 bp (1010 high quality bases) assembled on 2010-10-13
> FMO09578.5prime
CAGTCGACATGCACAACAACTCCACAAAAACCAAGGAAATGTTCATCGTG
CGTGCTCTAGAAAAGATCCTTGCCGATAAGGACATACGGCGCTCCCATCA
CTCGCAGCTGAAGAAGTCCTGCGATTCGGCGCTGGAGCAGATTAAGGCGG
AGCTAATCAGTGCCGGCCAGATCGCAGAGGGCAATGAGCTGCCCTGTGCC
GCACTCCCGCTGCCCAAGAATGATGCAGCGAGCATCATAAATGCGGAGAC
CTACTTTCTCCCCTTCGAGCTTGCCTGCAAGAGCCGCTCGCCCAGGATCG
TGGTCACCGCACTGGACTGCCTGCAGAAACTCATTGCCTATGGCCATTTG
ACAGGATCCATTCAGGACTCGGCCAATCCGGGTCACCTGCTCATCGACCG
TATCGTTGTGACCATATATGGCTGCTTCAGTGGTCCCCAGACGGACGAGG
CCGTCCAACTGCAGATAATAAAGGCTCTGCTCACGGTGGTCACCTCGCAG
CATGTGGAAATCCATGAATTCACACTGCTGCAAGCTGTGCGCACCTGCTA
CGACATCTATTTGTCCAGCAAGAACCTGGTCAATCAGACCACAGCACGCG
CTACGCTCACCCAAATGTTGAACGTGATATTTGCCCGCATGGAGAATCAA
GTGTACGAGCTACCACCTCCCAATTCCAATCCCACCAACGGCAGCATCCA
CTCGGAGGATTGCAATGGCTCGGGAGAGGAGTCGCTGCGGGATTCCGACG
AAGTAATTGCCTCGGAACTGCTGGCGGAGATCATATCAGCTGCCTACAAT
GAGGCGATGAATGATCAGGAATCGGTCGGTGAGCCAGAGCCAACACTTAA
TGGAAACGACTACTCCTCGCACTCGGATCACGACAGTGTGGAGCTGCACA
GCGAAAACGATGCGGTTGTAACGGCTAAGTTTACGCACATCCTGCAGAAA
GATGCTTTTCCTCGTGTTCCGGGCACTGTGCAGCTATCGATGAAGCCTTT
GCCGGGATGGACATCCAGAATCCGAAATCGCACGAACTGGCGTTCCAAGT
GGCTGTCAATGCATCTGCTGTCTGTTCATACTCCAGATGGCGGTCCGTCT
TCGCCTCCACGAGAATG
FMO09578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec71-RA | 5818 | CG7578-RA | 328..1432 | 9..1114 | 5160 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13793848..13794632 | 9..793 | 3910 | 99.9 | Plus |
| 2L | 23513712 | 2L | 13794892..13795189 | 786..1087 | 1110 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:49:30 has no hits.
FMO09578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:10 Download gff for
FMO09578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec71-RB | 299..1380 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:44:27 Download gff for
FMO09578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec71-RA | 328..1409 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:28 Download gff for
FMO09578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec71-RA | 328..1409 | 9..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:28 Download gff for
FMO09578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13794896..13795196 | 790..1093 | 95 | | Plus |
| 2L | 13793848..13794628 | 9..789 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:44:27 Download gff for
FMO09578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13793848..13794628 | 9..789 | 100 | -> | Plus |
| arm_2L | 13794896..13795196 | 790..1093 | 95 | | Plus |
