FMO09579.5prime Sequence
1091 bp (987 high quality bases) assembled on 2010-10-13
> FMO09579.5prime
CAGTCGACATGGACGGCCGAGGGGTTGGCGGCGGTGGTAGTGGTGCTGCC
ACAGGGGGAGGATCCGCCAACAACAAATCAGCTGCTGGAAATAGCGCCGC
CACTGGAAATGCCGATGCATCTACCGCCACAGCGGCGCCCAATGATAAGC
CAACGATTCTGGAAGGCGTTCTCCACAACATCTTCGATGGGCTGATGGAC
AAGGAGGAGCAGGTGCGGATTGCCATGCAGCAGGCGATCGTGAAGATCTT
GGAGACCCATCCGGAACGGGCTGCGGAGATCCTCAGCGAACATCGATCGC
AGCAGCCGAAGATGACCGATCAAACAGTGGCCATGTTGTTGGACTGCATT
CGTCGCGTGGTGGGAGTGGAAACTCCTCTGCCGCCGGCTGCAAATCAGAA
ACTTATTGATCTTGCGCTGCAGGAGCTCACCAAGAATCCCGAGCATTTGC
CACTCATACAGAATCCCGCCCAGCGCATCCTGGTAGCCATCGGACGGAGC
AGCCCAGAGAGTTGTGAGCAGGTAATGGAGGCGCTCCAGGAGAAGGGAAC
AAGTACAGAAGGTGTGGCTCACTTTATGCTGATGCAGTGCCTCGGTCTGC
TGGCCACTGAGAATCCGGCAGGGGTTGTGCCCCACATAAAGGCCATATTG
AGCCGTAGTCAGCCGCATCTAGTCGGGATACGCCAGGATCACATCAAGCA
GGCACATGCCTATGCCATCGGTAGATTCAGTGAGGCTCTACTGGAGGAGA
GCGGCAAAAAGGAGGAGGAGAACTGCTCCACGGAGATCAGTGTGGCCTAC
GATGTGCTCTTCAATCAATGGCTGCACTCCCGGGAGCCAAAGGTTTGCGT
GGAGATACTGCAGCCCTGTCCAGCATGTATCCACTGCTGCCCAAAGACCG
GGATTCAGGATCAGCCGCCCGATTGGTTCCCCAGATCCTGCGCTCTATCG
ACGCAGCGTGACAGGAATGCCGTGACGCAGTTCCTCTGCCTCCGTGTGAA
AACGATCTGGCACTAAATGCCCACAGTCTGATGCATAATGACAGTTGTTC
ACCCAATTTGTTCGACCTGTCTGCGTTATCGGACTATGAAA
FMO09579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c11.1-RB | 6204 | CG12132-RB | 169..1259 | 9..1089 | 4990 | 98.1 | Plus |
| c11.1-RA | 5874 | CG12132-RA | 169..1259 | 9..1089 | 4990 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9280706..9281387 | 1021..344 | 3010 | 98.1 | Minus |
| X | 23542271 | X | 9281451..9281630 | 343..164 | 900 | 100 | Minus |
| X | 23542271 | X | 9282792..9282949 | 166..9 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:49:34 has no hits.
FMO09579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:10 Download gff for
FMO09579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 146..1240 | 2..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:44:29 Download gff for
FMO09579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 164..1258 | 2..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:31 Download gff for
FMO09579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 164..1258 | 2..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:31 Download gff for
FMO09579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9280633..9281387 | 344..1088 | 97 | <- | Minus |
| X | 9281451..9281628 | 166..343 | 100 | <- | Minus |
| X | 9282793..9282954 | 2..165 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:44:29 Download gff for
FMO09579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9174666..9175420 | 344..1088 | 97 | <- | Minus |
| arm_X | 9175484..9175661 | 166..343 | 100 | <- | Minus |
| arm_X | 9176826..9176987 | 2..165 | 97 | | Minus |
