FMO09580.5prime Sequence
1144 bp (1040 high quality bases) assembled on 2010-10-13
> FMO09580.5prime
CAGTCGACATGACGCCCTGCAAGAGCGCCATTATCCTGGATGCCCAGACG
AGCACCACGCTAAAGTGCGAAGACGACGAGCCGATGAGCTGGTGGACCAG
TCAATCGCAATATGTGCATGTAAAGTCCTTCGATAATACGGAGGATCCGG
CTCGACCATTCGGAACTAGCCTGCATCTCATCGAAGTGACGGCTGACTAT
GTGGCAGCCTACTATTGCGTGAAGACTTCGAAATTCAGTCAGATCGCCAA
GGAGGAGCAGTCGGACGAGGCGATGATCGAATTGGTTAATCAAGGATACG
CCAGCTCCATCTACGTGTACGTGAATGATCCGGACACTAAGCTGGTCGAT
AGTCATAACGTGGTGACGGCACGCCAGTATACCGACGTAGTCATACCCTG
TAAACCAGCCATGCCGGACACAGAGGTGCTGCTAGAGACCAGTAATGGAG
AAAGCACGTGGAAAATCAGCTCGAAAGGTCAGATTCAGGGTAACCCCAAG
TTCTTCGATAGTGTGAGGTACCACCCCAGATGGGGCTTTACCTTTCGAGT
CATTGACTGTGTATCCGGTTACTTGTATTGCAAAACGTTGGACTATGAAT
TGATCATTGACGTTACCTATCCAGAAAAAGACGGCAAACCGCTGCCAAAG
CCCGTGATCAGGTCCTCCGTGGAGCATCACGTCTTCACGGACACCAACTT
CACCCTGGATTGCGAGCAGTCCGCCTACGTTGAATCAGTATACGGAATGG
AATGGTTCACTCCGTCCCGGGATGAGAATCGCATATTTGCCTCCCAATCA
AGAACCGATCCCAAGACCAGGAACAGCACCCACCAGACGGGCAGGAGCAC
CTTGACAGTGCTAAATGCACAACCCTCGGACACTGGTCTATACAAGTGTG
TGACCACAGATAATTCTAACCAGAACGTACAACGTGCCACCTACAGGATT
AAGTGCTAAAGCAAAACGAAAGTTACCTGAACGTGGGCGAACCATCGGGT
CATTACAACGTTCAGAATATGCCAATCCCCCCGATCCAAATGAACCGTCG
ACTTGGAGGGATTTCGACGCCCTCCTTTCAGTGGATCAATCCGAATGCAC
CGAGGTGCGACAATCGGAATACTCAGATTCTCTCCTGGAATTTG
FMO09580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RA | 5276 | CG8222-RA | 469..1580 | 9..1118 | 5150 | 98 | Plus |
| Pvr-RO | 5246 | CG8222-RO | 469..1577 | 9..1118 | 5095 | 97.8 | Plus |
| Pvr-RL | 5149 | CG8222-RL | 342..786 | 9..453 | 2180 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8228494..8228937 | 452..9 | 2175 | 99.3 | Minus |
| 2L | 23513712 | 2L | 8228083..8228257 | 627..453 | 875 | 100 | Minus |
| 2L | 23513712 | 2L | 8226217..8226395 | 953..775 | 865 | 98.9 | Minus |
| 2L | 23513712 | 2L | 8226458..8226606 | 776..628 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 8225982..8226141 | 1118..960 | 350 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:49:39 has no hits.
FMO09580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:11 Download gff for
FMO09580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RC | 347..1458 | 9..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:44:31 Download gff for
FMO09580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RA | 469..1580 | 9..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:33 Download gff for
FMO09580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RA | 469..1580 | 9..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:33 Download gff for
FMO09580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8226210..8226393 | 777..959 | 98 | <- | Minus |
| 2L | 8226458..8226606 | 628..776 | 100 | <- | Minus |
| 2L | 8228083..8228257 | 453..627 | 100 | <- | Minus |
| 2L | 8228494..8228937 | 9..452 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:44:31 Download gff for
FMO09580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8226210..8226393 | 777..959 | 98 | <- | Minus |
| arm_2L | 8226458..8226606 | 628..776 | 100 | <- | Minus |
| arm_2L | 8228083..8228257 | 453..627 | 100 | <- | Minus |
| arm_2L | 8228494..8228937 | 9..452 | 99 | | Minus |
