FMO09581.5prime Sequence
1107 bp (995 high quality bases) assembled on 2010-10-13
> FMO09581.5prime
CAGTCGACATGGAATACGAATCTTCCGAAATCAGTGATATAACCACAGGA
AGCTGCAAGAAAAGGCTCACATTTCTGAAATGTATTCTAAGCGACACCAC
AAGCGATCAAAAATGGGCGGCCGAGTTCGGCGAGGACACGGAAGGACATC
AGTTTTCGTTGGACTATCTGCTGGACACCTTCATCGTTCTCTATGACGAG
TGCAGCAACTCCTCCCTGCGCAGGGAGAAGGGCGTCTCTGATTTCCTCAA
ACTATCCAAACCCTTCGTGCACATAGTGCGAAAGCTTCGACTAAGCCGAG
ATGACTTTGACATACTCAAGATCATCGGACGCGGTGCCTTTGGAGAAGTG
TGCGTGGTTCAGATGATATCCACCGAAAAGGTGTATGCCATGAAGATTCT
GAACAAGTGGGAGATGCTGAAGAGGGCCGAGACGGCCTGCTTCCGCGAGG
AGCGGGATGTGTTGGTTTTCGGCGACCGGCAGTGGATCACCAACCTTCAC
TATGCCTTTCAAGACAATATTAACCTGTATCTGGTGATGGACTATTACTG
CGGCGGAGACCTGCTTACATTGCTCAGCAAATTCGAGGACAAGCTGCCCG
AGGACATGGCCAAGTTCTACATCACAGAGATGATCCTGGCAATCAATAGT
ATTCACCAGATTAGGTACGTTCACAGGGACATCAAGCCGGATAATGTACT
GCTCGATAAGCGCGGTCACGTGCGCCTGGCTGACTTTGGATCCTGCCTGC
GCCTGGACAAGGATGGCACCGTACAGTCCAACGTGGCCGTGGGCACACCC
GACTACATTTCCCCGGAAATTTTGAGGGCCATGGAGGACGGAAAGGGACG
CTACGGCACGGAGTGTGATTGGTGGTCACTCGGAGTGTGCATGTACGAGA
TGCTCTACGGAGAGACGCCCTTCTACGCAGAAAGTTTGGTGGAAACCTAT
GGCAAGATCATGACCACCAAAACTTGTTTCACTTACGTCACAAGAAACCC
TAAATACCAGTAATCGAAACGTCTCAGGACTTGCTCTTGCAACTGAATAT
GTTTTCCGAGAACCGACCTTGTCGAACGGCAATCAAGAACTCTTGAACCA
CCCTGGT
FMO09581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gek-RA | 5108 | CG4012-RA | 112..1211 | 9..1103 | 5045 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24096438..24097019 | 1103..527 | 2275 | 94.3 | Minus |
| 2R | 25286936 | 2R | 24097072..24097343 | 527..256 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 24097407..24097626 | 255..36 | 1100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:49:42 has no hits.
FMO09581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:12 Download gff for
FMO09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gek-RA | 110..1194 | 9..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:44:32 Download gff for
FMO09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gek-RA | 112..1196 | 9..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:33 Download gff for
FMO09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gek-RA | 112..1196 | 9..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:33 Download gff for
FMO09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24096476..24097018 | 528..1065 | 97 | <- | Minus |
| 2R | 24097072..24097343 | 256..527 | 100 | <- | Minus |
| 2R | 24097407..24097625 | 37..255 | 100 | <- | Minus |
| 2R | 24098498..24098525 | 9..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:44:32 Download gff for
FMO09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19983999..19984541 | 528..1065 | 97 | <- | Minus |
| arm_2R | 19984595..19984866 | 256..527 | 100 | <- | Minus |
| arm_2R | 19984930..19985148 | 37..255 | 100 | <- | Minus |
| arm_2R | 19986021..19986048 | 9..36 | 100 | | Minus |
