FMO09587.5prime Sequence
215 bp (215 high quality bases) assembled on 2010-10-13
> FMO09587.5prime
CAGTCGACATGAACTTCTACAACATCTTCGTTTTCGTCGCTCTCATTCTG
GCCATCACCATTGGACAATCGGAAGCTGGTTGGCTAAAGAAAATTGGCAA
GAAAATCGAACGTGTTGGTCAGCACACTCGCGACGCCACAATCCAGGGAC
TGGGAATCGCTCAACAGGCCGCCAATGTTGCAGCCACTGCTCGAGGTGCA
AGCTTTCTAGACCAT
FMO09587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CecA2-RA | 355 | CG1367-RA | 82..271 | 8..197 | 950 | 100 | Plus |
CecA1-RA | 339 | CG1365-RA | 74..263 | 8..197 | 800 | 94.7 | Plus |
CecC-RA | 386 | CG1373-RA | 93..272 | 8..187 | 570 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30212237..30212337 | 8..108 | 505 | 100 | Plus |
3R | 32079331 | 3R | 30210947..30211047 | 8..108 | 475 | 98 | Plus |
3R | 32079331 | 3R | 30212395..30212484 | 108..197 | 450 | 100 | Plus |
3R | 32079331 | 3R | 30216576..30216676 | 8..108 | 385 | 92.1 | Plus |
3R | 32079331 | 3R | 30211108..30211197 | 108..197 | 330 | 91.1 | Plus |
3R | 32079331 | 3R | 30213479..30213568 | 197..108 | 255 | 85.6 | Minus |
3R | 32079331 | 3R | 30216752..30216824 | 115..187 | 200 | 84.9 | Plus |
3R | 32079331 | 3R | 30213626..30213730 | 108..4 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:50:04 has no hits.
FMO09587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:15 Download gff for
FMO09587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecA2-RA | 79..274 | 1..201 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:44:46 Download gff for
FMO09587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecA2-RA | 79..274 | 1..201 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:45 Download gff for
FMO09587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CecA2-RA | 79..274 | 1..201 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:45 Download gff for
FMO09587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30212234..30212336 | 1..107 | 96 | -> | Plus |
3R | 30212395..30212487 | 108..201 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:44:46 Download gff for
FMO09587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26037956..26038058 | 1..107 | 96 | -> | Plus |
arm_3R | 26038117..26038209 | 108..201 | 97 | | Plus |