Clone FMO09591 Report

Search the DGRC for FMO09591

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:95
Well:91
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12825-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09591.5prime Sequence

458 bp (458 high quality bases) assembled on 2010-10-13

> FMO09591.5prime
CAGTCGACATGTGGAAGCTGGACACCAAAGGAGGAATCATCTGCTCGGGC
TGCCTGTCCATAGCCTTTGCCATAACCTATCTGGTTTTGATGGACGATTA
CTTCTGGAAATATGGACTCTACGAGATGGGAATACACATTTCGGCGCTGC
AGATCTTGGGAAGCGTGGTCCTCATCGTTGGAGCCATAAAGCAAAAGCAC
AAGTTCTTCGTGCCGTGGATGATAACCACAGGATTCTTTTTATACCTGAT
GGTGAACCTGTTCATTTCACTGATAGTCCAGGGCACAGCTTGGATCTTCG
GACCATTGATGGTCGTTCCGTTCACAGCCTATCTGGGCTGCGCCCTGTAC
TCGGTGCAGATGTGCTTCGACAGGATGCGCAAGGAGGAGCCACCGGCATA
TGCCAGCTTGTCCGACAAGAAGGAGTTCATCAATCACATAGCAAGCTTTC
TAGACCAT

FMO09591.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12825-RA 585 CG12825-RA 49..482 7..440 2125 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7789570..7789712 185..327 700 99.3 Plus
2R 25286936 2R 7789770..7789885 325..440 535 97.4 Plus
2R 25286936 2R 7789254..7789358 7..111 525 100 Plus
2R 25286936 2R 7789421..7789500 112..191 400 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:50:19 has no hits.

FMO09591.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:17 Download gff for FMO09591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12825-RA 41..474 7..440 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:44:53 Download gff for FMO09591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12825-RA 49..482 7..440 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:52 Download gff for FMO09591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12825-RA 49..482 7..440 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:52 Download gff for FMO09591.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7789254..7789358 7..111 100 -> Plus
2R 7789421..7789500 112..191 100 -> Plus
2R 7789577..7789712 192..327 100 -> Plus
2R 7789773..7789885 328..440 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:44:53 Download gff for FMO09591.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3676759..3676863 7..111 100 -> Plus
arm_2R 3676926..3677005 112..191 100 -> Plus
arm_2R 3677082..3677217 192..327 100 -> Plus
arm_2R 3677278..3677390 328..440 97   Plus