FMO09622.5prime Sequence
974 bp (883 high quality bases) assembled on 2010-11-05
> FMO09622.5prime
CAGTCGACATGTCGATGATATTCAACACGGAGTATGGCTACCTGGAGGCC
CTAACGCGCGGATTCAAGAACGGCATGCTAAAGCACTCGGACTATCTAAA
TCTGACCCAGTGTGAATCCCTCGAGGACGTAATGATCAGCATCCAGGGCA
CGGATTACGGTCTCATCTTTGGTGGCGAACAATCAGCGCCGTCCGTTGAG
GTGATCGAAAGATGCCTTAGGGATCGTCTGCTGCAGCAATACTACTACAT
ACGCAGTCATTCGACGGAGCCGCTGACCACCTTTATGGAGTTCATACGAT
ATCCGTTCATGATCGATAATGTGGCGCTTCTGGTCGCTGGCCTAAACAAT
CACCGATCCATGAAGCGTCTGCTAAGAATGTGTCATCCGCTGGGCGAATT
CGATCAACTGGGCGCCATCGAAGTGGCCTCGAATTCTGCGGAGCTCTTCG
ACGCCGTTCTAATTGACACGCCCATCGCTCGGTTTGTGCCACGCGATTTG
CCCATGGAGTCGTTGCGTTACCTCGACGTGGAGATTGTGCGTGCCCATCT
GTATCGTGCTTATTTGGAGAAATTCTACGCCTATTGCAGCCAACTGGGCG
GCAATACCGCCAACGTGATGACCAATCTATTGTCCTTCGAGGCGGATCGT
CGGACCATTACAATAGCTGTGAACGCTATTGGCAGTGATATCATACCGAA
GGAGCGTCTAAAGATGTTCCCCACCTGTGGCTACCTGCCCAAAATAGCCT
TGGCCTCCATGTCCACTTTAAATGATACGGATAAAATAAAGGATGTTTGC
AATGTGTTCGATGGCTATGGCAAAATTGTTTGACAATTTGGAGCGCGACT
CGGACGCATGATTACGCTGGAGGACCGCTTTCCCATGATGTAGGCCAAGA
AGAATGTGGCAGACCTCTCTGGCACAACAACAATTTCCGGGATCTTCAAC
TCGGTCATAAACTTTAAAAATTGA
FMO09622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaAC39-2-RA | 1233 | CG4624-RA | 71..1031 | 2..964 | 4465 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23158554..23159246 | 694..2 | 3435 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23158273..23158490 | 908..691 | 935 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:01 has no hits.
FMO09622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:32 Download gff for
FMO09622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4624-RA | 70..991 | 1..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:11 Download gff for
FMO09622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaAC39-2-RA | 70..991 | 1..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:39 Download gff for
FMO09622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaAC39-2-RA | 70..991 | 1..924 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:39 Download gff for
FMO09622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23158268..23158486 | 695..914 | 97 | <- | Minus |
| 3R | 23158554..23159246 | 1..694 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:11 Download gff for
FMO09622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18983990..18984208 | 695..914 | 97 | <- | Minus |
| arm_3R | 18984276..18984968 | 1..694 | 99 | | Minus |
