FMO09647.5prime Sequence
930 bp (930 high quality bases) assembled on 2010-11-05
> FMO09647.5prime
CAGTCGACATGGAGCTGGAGATTTTGAACGCGAAGAACAGCAAGCCGTAC
GGCAAGGTGAAGGTGCCCTCCGGCGCCACGCCCATCGGCGATCTGCGCGC
CCTAATCCACAAGACCCTGAAGCAGACCCCACACGCGAATCGCCAGTCGC
TGCGCCTGGAACTGAAGGGCAAAAGCCTGAAGGATACGGACACATTGGAA
TCCCTGTCGCTGCGTTCCGGCGACAAGATCTATGTGAAGGATCTGGGTCC
CCAGATTGGCTGGAAGACCGTTTTCCTGGCCGAGTACGCCGGCCCACTGA
TTGTATACTTGATTTTCTACTTCCGACCGGAGTTGGTGTACGGCAAAGCT
GCCAGTCTGCCGATTTCCCTAACCACCCACATTGCCGCCGGCTGCTATAC
GGTCCACTATGTGAAGCGTCTGCTGGAGACGATTTTCGTGCACCGCTTCT
CGCACGCCACCATGCCGCTGAGGAATCTCTTCAAGAACTGCACATACTAC
TGGGGATTCACCGCCTATGTGTCCTACCACGTGAACCATCCGCAGTTCAC
CTCGCCCTGCATGTGCACCGTTTGGGGAGCTCTTGGGGCATTCGCTCTCT
GCGAACTAGGAAACTTTTCGGTGCACATTGCCCTGCGCAACCTGCGTCCG
CCGGGAACAAAAGTGCGCAAGATTCCGGTGGCCGATGGAAATCCCCTCAC
CAAGCTGTTCGACTTGGTTTCTTGCCCCAACTACACCTATGAGATCGGTG
CCTGGGTTTCATTCTCTGTGCTGACTTCTTGCCTGGCTGCCTATCTGTTC
GCCTTTGCCGGAGCCTTCCAGATGACCATTTGGGTCTTGGCCAAGCATCG
CAACTACAAAAGGAGTTTAACGACTACCCTCGCAGCGCCGCTCCATCTTC
CCCTTCGTCCTGGCAAGCTTTCTAGACCAT
FMO09647.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sc2-RA | 1105 | CG10849-RA | 50..955 | 9..912 | 4390 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3903541..3903911 | 9..379 | 1795 | 98.9 | Plus |
| 3L | 28110227 | 3L | 3904069..3904285 | 380..596 | 1085 | 100 | Plus |
| 3L | 28110227 | 3L | 3904684..3904885 | 713..912 | 880 | 98 | Plus |
| 3L | 28110227 | 3L | 3904506..3904621 | 597..712 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:49:49 has no hits.
FMO09647.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:19 Download gff for
FMO09647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sc2-RA | 24..942 | 1..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:07:29 Download gff for
FMO09647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sc2-RA | 43..961 | 1..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:37:55 Download gff for
FMO09647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sc2-RA | 43..961 | 1..920 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:37:55 Download gff for
FMO09647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3903534..3903911 | 1..379 | 97 | -> | Plus |
| 3L | 3904069..3904285 | 380..596 | 100 | -> | Plus |
| 3L | 3904506..3904621 | 597..712 | 100 | -> | Plus |
| 3L | 3904684..3904891 | 713..920 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:07:29 Download gff for
FMO09647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3903534..3903911 | 1..379 | 97 | -> | Plus |
| arm_3L | 3904069..3904285 | 380..596 | 100 | -> | Plus |
| arm_3L | 3904506..3904621 | 597..712 | 100 | -> | Plus |
| arm_3L | 3904684..3904891 | 713..920 | 96 | | Plus |
