FMO09648.5prime Sequence
1150 bp (1047 high quality bases) assembled on 2010-11-05
> FMO09648.5prime
CAGTCGACATGAACTTTGAGCAGGTCAATATACCAGAGAAACTAGTGCCG
GACAACTATTTGCAACTGGGACTGGCTGCGCAACGCAGTAAGCAGCGCAG
TTTTAAGGAGCTGCTCGAAAAGCGAAAGCTTCCGAAAAATGGTTGGTCCG
ATGAACGTATCGAGGAGCTGGTGCACATGCTGGCTTCCTTGGACAGCAAT
AACTATCCACATAAGGTCGGTTTAGGAGAGCGGGAGGCGCGTATAGCCTG
CAAACTCGTGGCTCGCCGTCACTACAACTTCGGTCATGGTATCGGCAGAT
CTGGAGACTTACTAGAGGCACAACCCAAGGCAGCTGGCTCTACGCTGCTC
GCTCGTCTCACAAACGCCCTGATTCTGGACCTTATTCGGGGAATCGGACT
GCCCAGCTGTGCTGGCTGCTTTTTGGTGCCAATGTGTACAGGCATGACAT
TGACTTTGTGCCTGCAGAGTCTTCGCAAGCGGCGACCCGGGGCGCGGTAT
GTGCTCTGGTCCCGCATCGATCAGAAGTCCTGCTTCAAGGCCATCACAGC
AACGGGCTTGGTGCCGGTAGTCATCCCCTGCCTTATTAAAGGAGAGTCCC
TGAACACGAACGTAGATTTATTCCGAGAAAAGATAAAGTCATTGGGAGTG
GATAGCATCCTCTGCCTGTACACTACCACCAGTTGTTTTGCTCCACGAAA
CAGCGATGACATTGCCGAAGTATCCAAGTTGTCCAAACAATGGCAGATTC
CCCATCTGGTCAATAATGCCTATGGATTGCAGGCAAAGGAAATCGTTAAT
CAGTTGGAGTGCGCCAATCGAGTCGGACGCATTGATTACTTCGTTCAGAG
CAGCGACAAGAATTTGCTGGTGCCAGTGGGTAGTGCCATTGTGGCCAGCT
TCAATGAGAGTGTGCTCCACGATGTGGCCAGTACTTATGCTGGGAGAGCT
AGTGGTTCCCAGTCACTAGATGTCTTGATGACGCTACTCTCACTTGGGCG
CAATGGCTTTCGATTGCTTTTCGATCAGCGGGGCGAGAACTTCATTACCT
GAGAAGGAATCTTAGGAAATTTGCAAGCCCGCGGAGAGAATTGTTTTGAC
GCAGTTTACTCAATCCCTGCATACATTGGCCTTGGCTTGGGATCCATGGA
FMO09648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1427-RC | 1580 | CG1427-RC | 124..1212 | 9..1095 | 5305 | 99.4 | Plus |
| CG1427-RD | 1574 | CG1427-RD | 124..1206 | 9..1095 | 5205 | 98.8 | Plus |
| CG1427-RE | 1534 | CG1427-RE | 368..1166 | 299..1095 | 3855 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5601914..5602737 | 253..1075 | 4025 | 99.5 | Plus |
| 3R | 32079331 | 3R | 5601730..5601862 | 120..252 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 5601556..5601669 | 9..122 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:49:53 has no hits.
FMO09648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:20 Download gff for
FMO09648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1427-RC | 117..1218 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:07:31 Download gff for
FMO09648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1427-RC | 117..1218 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:37:57 Download gff for
FMO09648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1427-RC | 117..1218 | 1..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:37:57 Download gff for
FMO09648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5601549..5601669 | 1..122 | 96 | -> | Plus |
| 3R | 5601733..5601862 | 123..252 | 100 | -> | Plus |
| 3R | 5601914..5602764 | 253..1100 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:07:31 Download gff for
FMO09648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1427271..1427391 | 1..122 | 96 | -> | Plus |
| arm_3R | 1427455..1427584 | 123..252 | 100 | -> | Plus |
| arm_3R | 1427636..1428486 | 253..1100 | 98 | | Plus |
