FMO09659.5prime Sequence
933 bp (847 high quality bases) assembled on 2010-11-05
> FMO09659.5prime
CAGTCGACATGTTCGGATTGGGACAACTTTTGGCGGTAGCCCTTCTTCTC
ATTTTCTTGCCATCGGGCTTGAGAGGCGCAACGACACGAACACCCTTGGA
CACGAAGGCCATCCGTCCGAGATTCAATGCGGATCCCGGCAGGATTATCA
ATGGAACAGAGGCCTCTCTGGGCGCAACTAGGCATCAGGTGGGCATTCGC
AAGGCTCTCAACGATGGCTACTTCTTTGGAACCGGGCACCTTTGCGGAGG
ATCTCTCATCCGGCCGGGATGGGTACTCACCGCCGCCCATTGCTTTGTGG
ATCAGATTATTTACGACGGCACTTTCGTGCCCAAGGAGGAGTTCATCGTG
GTGATGGGTAACCTGGATCGCTACAATCGCACCAACACGCTAACATTCAC
GATCGAAGAGCGCATAATGCAGCTGGATAAGTTCGACCTTTCCACCTACG
ACAAGGACATCGCCCTGCTGATGCTGAATGGTACTGTACCCACTGGACAT
CCGACCATTCGTCCAATTGCCCTCAATCGGTTTGCCATACCGGAGGGCGT
CGTCTGCCAGGTGACGGGCTGGGGCAATACGGAGGATGGCTATGTCTCCG
ACATCCTGATGACCGTCGATGTGCCGATGATCAGCGAGGAGCATTGCATC
AATGACAGCGACCTGGCCACCTGATTCAGCCGGGAATGATATGTGCCGGT
TATTTGGAGGTGGAGAAAAGGATGCCTGCGCCGGCGATTCCGGCGGACCA
TTGGTGTGCCAAAGTGAATTGGCCGGCGTGGTTTCCTGGGGCATTCAATG
TGCCCTGCCCAGATTACCGGGTGTGTACACAGAGTGTCCTACTACTACGA
CTGGATACTACAGAATATGGGCGAAATAGGTGAAAGAAGTGGTGGAAAAA
AATGTTGAGGGAAGTGGTGGAGGGAAATGCTGA
FMO09659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6048-RA | 1158 | CG6048-RA | 34..959 | 9..933 | 4365 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5953215..5953834 | 302..919 | 2800 | 98.2 | Plus |
| X | 23542271 | X | 5952730..5952957 | 74..301 | 1125 | 99.6 | Plus |
| X | 23542271 | X | 5952598..5952665 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:50:52 has no hits.
FMO09659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:30 Download gff for
FMO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6048-RA | 1..925 | 9..932 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:06 Download gff for
FMO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6048-RA | 30..958 | 1..932 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:35 Download gff for
FMO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6048-RA | 30..958 | 1..932 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:35 Download gff for
FMO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5952594..5952664 | 1..75 | 94 | -> | Plus |
| X | 5952732..5952957 | 76..301 | 99 | -> | Plus |
| X | 5953215..5953846 | 302..932 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:06 Download gff for
FMO09659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5846627..5846697 | 1..75 | 94 | -> | Plus |
| arm_X | 5846765..5846990 | 76..301 | 99 | -> | Plus |
| arm_X | 5847248..5847879 | 302..932 | 97 | | Plus |
