FMO09661.5prime Sequence
1115 bp (1006 high quality bases) assembled on 2010-11-05
> FMO09661.5prime
CAGTCGACATGGAGGAAGAACCCTTAGTTTCCCCTTCGGTTCCAATTCGA
AAGCCATGTGGTACGTTTAAGCCTCCGGCCATCTACCAGAAGCTGATGAT
TGACAATCTGACTGTCATTCGACCGCCCATCCTGAAGATCTTCTACTGGG
AGAGCTTTGAAATAACGGGCTTGAATCGGAAGCTGCGTTCGAACCGCATA
GAGCATGAGCATACATTCAAGATACCTATTCGCCAGATCCACAGTCATCC
CCTGAAAATGGTCTTCTGGATCCGTAATCTATCGGCCGCGAACGCCAAGT
TGACTCTAAAGCGTATCCAAAACTGTCAATGCCAGCCGCAGCAGACCCAA
GTCGGATTCAATCAGTTCCGCCAGCTCTTCCACTGCCCACATCGCAGACT
GCTCCACATCAGCCAGGAGATCCTGTCTATCAATCCTGATGAGGTGGTGT
CCCTCACCGTAACGGCCTATTTCTTCTTGTACGGCGAACACCTGCTCACC
TACGAAGTTCACACTGAAGACAATCGCAAGTTTCTGTGGCATTTTCATCT
GGAGATCTCGTCCTTTGACCCCGAAAAGTGTCTACTCACTAAAGAGCTGC
TGCCGGTAAACATAAAAAGCTTTTACCATATAACGCAGCCGTTGTGGGTC
CAAAATATCACGATGTCACACTTGTCATTCTCGTTTGCTTCAAGGGATCG
TGGCCTCAAGCTGCTCAATATGAATCTCACCGTGCCTCGACAGAGTGTGT
GGCCCCTCCTGGTGGACTATCGACCCTTGGACTACGAAAATGAGGCGGAA
TTGTCTTAACATATGAAAATACCAAGGCTCGCTACAAAATTAAAGCACGA
GGCGTGCTGACTGACGAGAAGGAGCAGACGGACATGCCCTTGAAAGATCG
GGAATGCGTCGATTTCCTGCACGTCATCTACCCTAATATAAGTAAACTTT
GAAATCCTGCCTGCGTGAGATCGGACGCAGCTCGTCATGTTCATACCTAC
GGACAGCATGCATGGAGTTCCGGTGGGCAAGGCTACATATCACCGATTTT
TGCGGGTGTGGTTCAATCCCGCCTAATTTCCGCCCTAAGGCCGTCCACTT
CGAGACGTGGCGAAA
FMO09661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17005-RE | 2182 | CG17005-RE | 57..1143 | 9..1092 | 4875 | 97.2 | Plus |
| CG17005-RB | 1917 | CG17005-RB | 57..1143 | 9..1092 | 4875 | 97.2 | Plus |
| CG17005-RC | 1969 | CG17005-RC | 269..1195 | 169..1092 | 4075 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9328012..9328354 | 169..511 | 1685 | 99.4 | Plus |
| 2L | 23513712 | 2L | 9328413..9328696 | 512..795 | 1390 | 99.3 | Plus |
| 2L | 23513712 | 2L | 9327800..9327960 | 9..169 | 805 | 100 | Plus |
| 2L | 23513712 | 2L | 9328759..9328987 | 799..1026 | 800 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:50:58 has no hits.
FMO09661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:31 Download gff for
FMO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17005-RB | 48..1101 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:09 Download gff for
FMO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17005-RB | 48..1101 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:38 Download gff for
FMO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17005-RB | 48..1101 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:38 Download gff for
FMO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9327791..9327960 | 1..169 | 97 | -> | Plus |
| 2L | 9328013..9328354 | 170..511 | 99 | -> | Plus |
| 2L | 9328413..9328695 | 512..794 | 99 | -> | Plus |
| 2L | 9328754..9328995 | 795..1035 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:09 Download gff for
FMO09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9327791..9327960 | 1..169 | 97 | -> | Plus |
| arm_2L | 9328013..9328354 | 170..511 | 99 | -> | Plus |
| arm_2L | 9328413..9328695 | 512..794 | 99 | -> | Plus |
| arm_2L | 9328754..9328995 | 795..1035 | 93 | | Plus |
