FMO09671.5prime Sequence
1086 bp (875 high quality bases) assembled on 2010-11-05
> FMO09671.5prime
CAGTCGACATGGCAGCTAGCAAATTCCATTGCGGCAAGCAATTGACAGCC
ACACATTCACATTTCGATGCGACATGTGCGAAAATCAGGGCCTTTTACTT
TGACCTGGACAACACGTTGATTCCCACCAGAGCCGGCGATTCCAAGGCGA
TCAGAAAGCTCGCTGATTTTCTGGAGACCCAATACCAGTTCAGCAAAGAT
GACGCAACACAGGCCACCCAAAACTTTCTAAAGGCCTTCCGCCGCTGTCC
CGATAACTCGCAAACATCGCTGGACTCGTGGCGCACTCACCTGTGGCGCG
AATCCCTTCCAGCGCGCCACAAGCACCTGGCGGAACAGATCTATCCCAAG
TGGCTGAAGTTGCGGTATCGCTACCTAGCCGTTCCGGCGGACTATGTCCA
GCTGCTGCTGCGGATGCGCCAGGCAGGCTATGCCCTGGCCCTCATCACCA
ACGGACCGTCGAACGCTCAATGGGAGAAGGTGGCTGAGCTGAATGTGCGC
GGCTACTTTGACTGCGTGCTGGTCTCATCGGATCTGCCATGGGAGAAACC
GCATCCGGAGATCTTCTATGCCGCCTGCAACTTTCTCAATGTCAAGCCGC
AGGAGTGCGTCATGATCGGCGACAAACTGGAGACCGACATCAAGGGCGGT
CACTTGGCCCAGCTGGGTCTCACATTCTGGACGCCACTAAGCAATAGCAG
CGCGGCGGCACAATCGCTAGAGGATGTGGAGTACAAGCCGCACGTCAAGC
TGGGCAGCCTGCTGGAGATGTACAAGTACTTTCCGCGCCTCAACTCAGTC
GCTCTGCCCGAGATGCCGTCGGGTTCCAGAAGACGTGGCAGCCACATGAG
TCCCATTATCCAGGGCTCCGGCAGCGGAAGCAGCTCCAGCGTCATTTGTG
TGCGGCGGTCTGGCCTGGATACCATCACATCCACCACCAGCTGCCCCAGA
GCGCAGGATCAGCTCTTTCTTCTTCATCTTCTAAAGCAGGGGTTTTTTTT
ACGAAGACTTTTCTTGCCCGCCATGATGGTTCCTTATCGAGGGGGGAAAA
AAAAATGCGAAGATTTTTGGGAAATTTCTTAAACAA
FMO09671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15771-RD | 2464 | CG15771-RD | 481..1423 | 8..949 | 4510 | 98.7 | Plus |
| CG15771-RA | 2290 | CG15771-RA | 307..1249 | 8..949 | 4510 | 98.7 | Plus |
| CG15771-RC | 2292 | CG15771-RC | 456..1251 | 155..949 | 3775 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5757860..5758348 | 157..645 | 2430 | 99.8 | Plus |
| X | 23542271 | X | 5758403..5758710 | 643..949 | 1325 | 96.1 | Plus |
| X | 23542271 | X | 5756054..5756204 | 8..158 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:49:56 has no hits.
FMO09671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:20 Download gff for
FMO09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15771-RA | 410..1365 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:07:33 Download gff for
FMO09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15771-RA | 300..1255 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:37:58 Download gff for
FMO09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15771-RA | 300..1255 | 1..956 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:37:58 Download gff for
FMO09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5756047..5756204 | 1..158 | 97 | -> | Plus |
| X | 5757862..5758347 | 159..644 | 99 | -> | Plus |
| X | 5758405..5758663 | 645..903 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:07:33 Download gff for
FMO09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5650080..5650237 | 1..158 | 97 | -> | Plus |
| arm_X | 5651895..5652380 | 159..644 | 99 | -> | Plus |
| arm_X | 5652438..5652696 | 645..903 | 98 | == | Plus |
