Clone FMO09685 Report

Search the DGRC for FMO09685

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:96
Well:85
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSamDC-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09685.5prime Sequence

1117 bp (960 high quality bases) assembled on 2010-11-05

> FMO09685.5prime
CAGTCGACATGTTGGAGAACGGTTCGCACTTCTTCGAGGGCGTTGAGAAA
CTCCTTGAGATTTGGTTTGAGGAGAGCTCCAACGGTGACGATGATCTGCG
TAACATCAGCAGATCTGATTGGGAAAACGTGCTTAGCAATGTCAACTGTC
AAATAATAAGCACATCCAAAAACGACATTATTGATGCTTTTGTGTTAAGT
GAGAGCAGTATGTTTGTTTCAAAGCGACGATGGATCCTTAAAACTTGTGG
AACGACTACTCCATTGAAATGCCTGGGTCAGTTGCTTAAGCTGGCTGAGG
CCAATGGATACAATGTGGTCGCAGACTTGTTCTACTCGCGAAAAAATTTC
ACTAGACCGGAGGCGCAGATAACTCCCCATCAAGGCTTTACGGAGGAAGT
TACGTATCTGGACTCAATTTTTCCCAACGGAAGATCCTATTGTCTGTTCT
CCATGAACCTGGAGTGTTGGTACCTCTACACTTTTAGTCGTTCTGATATC
AAAATTACGCCCCAACTTATATCGGATGAGAAAAACGTTGACTCCGATCC
AGATCAAACTATTGAAATATTAATGCAAGATCTAGATCCCGAAACCATGT
CAATCTTCTATAAAAACAAGTTTAATGATGCTAATGGCGCTACTGTGAAA
TCTGGTATCGATACCATATTGCCGACTATGCACATTGATGACTTTTTGTT
CGATCCTTGCGGCTACTCCATGAATGGAATCAACGATAAGGGGGAGTACA
TGACAATTCATATTACTCCGGAGAATCAATTTTCGTATGTGAGCTTCGAA
ACAAATGTGGCTCTAAGTAACTATCGTAAACTTATCAATCAAGTAATCAA
TACTTTCAAGCCGGGAAAGTTTATTGTACCATCTTTGCCAATAAGTGCTC
GTTGGCCTACCAACTATGAAGGAACTGGAAGTGAGTACTCACAGCGATGC
ACTGGAAAACGAACCGACTGCATGTTGCAACTTTCCATCTTACATATCTT
TCTGTTTGGCCAATATTTCCCTAGGGAGAAGAAAAGGGTGATAATTATCT
AAGTTTTTCTTAACCATTCTTTGTGCGCGACGCCGCCTAGTCAATGGGGA
ATCATCCTATATAACTA

FMO09685.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
SamDC-RA 1224 CG5029-RA 58..1097 8..1046 4780 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10340530..10340811 366..647 1380 99.3 Plus
2L 23513712 2L 10340309..10340479 198..368 855 100 Plus
2L 23513712 2L 10341006..10341163 739..895 740 99.4 Plus
2L 23513712 2L 10339514..10339618 8..112 525 100 Plus
2L 23513712 2L 10340866..10340960 647..741 475 100 Plus
2L 23513712 2L 10340149..10340238 110..199 450 100 Plus
Blast to na_te.dros performed 2014-11-26 16:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 3922..3991 684..613 111 65.3 Minus

FMO09685.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:24 Download gff for FMO09685.5prime
Subject Subject Range Query Range Percent Splice Strand
SamDC-RA 38..1059 1..1021 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:07:44 Download gff for FMO09685.5prime
Subject Subject Range Query Range Percent Splice Strand
SamDC-RA 52..1073 1..1021 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:12 Download gff for FMO09685.5prime
Subject Subject Range Query Range Percent Splice Strand
SamDC-RA 52..1073 1..1021 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:12 Download gff for FMO09685.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10339508..10339618 1..112 97 -> Plus
2L 10340152..10340238 113..199 100 -> Plus
2L 10340311..10340479 200..368 100 -> Plus
2L 10340533..10340811 369..647 99 -> Plus
2L 10340867..10340959 648..740 100 -> Plus
2L 10341008..10341163 741..895 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:07:44 Download gff for FMO09685.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10339508..10339618 1..112 97 -> Plus
arm_2L 10340152..10340238 113..199 100 -> Plus
arm_2L 10340311..10340479 200..368 100 -> Plus
arm_2L 10340533..10340811 369..647 99 -> Plus
arm_2L 10340867..10340959 648..740 100 -> Plus
arm_2L 10341008..10341163 741..895 99 -> Plus