FMO09685.5prime Sequence
1117 bp (960 high quality bases) assembled on 2010-11-05
> FMO09685.5prime
CAGTCGACATGTTGGAGAACGGTTCGCACTTCTTCGAGGGCGTTGAGAAA
CTCCTTGAGATTTGGTTTGAGGAGAGCTCCAACGGTGACGATGATCTGCG
TAACATCAGCAGATCTGATTGGGAAAACGTGCTTAGCAATGTCAACTGTC
AAATAATAAGCACATCCAAAAACGACATTATTGATGCTTTTGTGTTAAGT
GAGAGCAGTATGTTTGTTTCAAAGCGACGATGGATCCTTAAAACTTGTGG
AACGACTACTCCATTGAAATGCCTGGGTCAGTTGCTTAAGCTGGCTGAGG
CCAATGGATACAATGTGGTCGCAGACTTGTTCTACTCGCGAAAAAATTTC
ACTAGACCGGAGGCGCAGATAACTCCCCATCAAGGCTTTACGGAGGAAGT
TACGTATCTGGACTCAATTTTTCCCAACGGAAGATCCTATTGTCTGTTCT
CCATGAACCTGGAGTGTTGGTACCTCTACACTTTTAGTCGTTCTGATATC
AAAATTACGCCCCAACTTATATCGGATGAGAAAAACGTTGACTCCGATCC
AGATCAAACTATTGAAATATTAATGCAAGATCTAGATCCCGAAACCATGT
CAATCTTCTATAAAAACAAGTTTAATGATGCTAATGGCGCTACTGTGAAA
TCTGGTATCGATACCATATTGCCGACTATGCACATTGATGACTTTTTGTT
CGATCCTTGCGGCTACTCCATGAATGGAATCAACGATAAGGGGGAGTACA
TGACAATTCATATTACTCCGGAGAATCAATTTTCGTATGTGAGCTTCGAA
ACAAATGTGGCTCTAAGTAACTATCGTAAACTTATCAATCAAGTAATCAA
TACTTTCAAGCCGGGAAAGTTTATTGTACCATCTTTGCCAATAAGTGCTC
GTTGGCCTACCAACTATGAAGGAACTGGAAGTGAGTACTCACAGCGATGC
ACTGGAAAACGAACCGACTGCATGTTGCAACTTTCCATCTTACATATCTT
TCTGTTTGGCCAATATTTCCCTAGGGAGAAGAAAAGGGTGATAATTATCT
AAGTTTTTCTTAACCATTCTTTGTGCGCGACGCCGCCTAGTCAATGGGGA
ATCATCCTATATAACTA
FMO09685.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SamDC-RA | 1224 | CG5029-RA | 58..1097 | 8..1046 | 4780 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10340530..10340811 | 366..647 | 1380 | 99.3 | Plus |
2L | 23513712 | 2L | 10340309..10340479 | 198..368 | 855 | 100 | Plus |
2L | 23513712 | 2L | 10341006..10341163 | 739..895 | 740 | 99.4 | Plus |
2L | 23513712 | 2L | 10339514..10339618 | 8..112 | 525 | 100 | Plus |
2L | 23513712 | 2L | 10340866..10340960 | 647..741 | 475 | 100 | Plus |
2L | 23513712 | 2L | 10340149..10340238 | 110..199 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord | 7404 | accord ACCORD 7404bp | 3922..3991 | 684..613 | 111 | 65.3 | Minus |
FMO09685.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:24 Download gff for
FMO09685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SamDC-RA | 38..1059 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:07:44 Download gff for
FMO09685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SamDC-RA | 52..1073 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:12 Download gff for
FMO09685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SamDC-RA | 52..1073 | 1..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:12 Download gff for
FMO09685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10339508..10339618 | 1..112 | 97 | -> | Plus |
2L | 10340152..10340238 | 113..199 | 100 | -> | Plus |
2L | 10340311..10340479 | 200..368 | 100 | -> | Plus |
2L | 10340533..10340811 | 369..647 | 99 | -> | Plus |
2L | 10340867..10340959 | 648..740 | 100 | -> | Plus |
2L | 10341008..10341163 | 741..895 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:07:44 Download gff for
FMO09685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10339508..10339618 | 1..112 | 97 | -> | Plus |
arm_2L | 10340152..10340238 | 113..199 | 100 | -> | Plus |
arm_2L | 10340311..10340479 | 200..368 | 100 | -> | Plus |
arm_2L | 10340533..10340811 | 369..647 | 99 | -> | Plus |
arm_2L | 10340867..10340959 | 648..740 | 100 | -> | Plus |
arm_2L | 10341008..10341163 | 741..895 | 99 | -> | Plus |