FMO09687.5prime Sequence
926 bp (771 high quality bases) assembled on 2010-11-05
> FMO09687.5prime
CAGTCGACATGACAGAGAAAGTGACTAAACTGGCGCTGGCCAGTCGCCTT
ATCGTCCTCCTGGTACAATTGGTCGCCAACGGAGCCCTGCCAGAGCACAA
ACCAGATGTATTCCGGATGCCGGTTTCGTCAGATCAGAATGCCTCCTGGA
TAGACAAGGTGATTAAGCGCTGCTTGGGAGGATTACGGCACTGGGATGGA
GAATACTTTCTGCATATAGCCGAGAATCTGTACAGCTACGAAAACACGTT
GGCCTTCTATCCACTATATCCGGTTGTCGTGCGTCACGTGGGACAGGCCG
TGGAGGCCATCGGGATCTCCTTATCACAGGAATCTATCCTGCTGGTGGTG
GCTGTCGCCCTGAACTTCTGGCTCTTCTGCGAGTCAGCTAATTTGCTGTT
TCAGCTCACCCAAGTATTGTTCAACGATTTAAACAAGAGCTGGATTGCGG
CCCTCATCTACTGCTTTAATCCGGCAACCATTTTCTTCACCGCCGCCTAC
TCAGAGACCTTTTTCGCCTACTCCAGCCTTCATCTGATGCTGGAGTGCTC
GAAGCCGACGGGTAGCTTCCGATATCTGCGTTTGGGAACCTCCTTAGTCG
CCTGTTTACTGTGCCGCTCAAATGGATTAATCACCTTGGGATACCCGCTC
TACTTCTTCGGACGCCAACTGCTACTCAAGAACAAGAGCCCAACACCTGC
ATGCAGCTGACACAAATGACGCTGACCATTCTGGGAGCCATTGGGATACT
GCACACCTACTATTTTCTACATAGTAGGCTATACTGTCTGCCGAACACAA
GGCCATACATCCGCAGCACATTGTGGACTTCGCAGGGTACGGAATTACCT
ATTGTCTGTCAGGGCTCTGAAGGATAAACCTGGTGCCTGTAACGTGTCGC
TCCCCTCACTTACTGGTGACCAACAA
FMO09687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-V-RC | 1780 | CG44239-RC | 225..1136 | 9..913 | 4100 | 97.3 | Plus |
| PIG-V-RB | 1851 | CG44239-RB | 296..1207 | 9..913 | 4100 | 97.3 | Plus |
| PIG-V-RA | 1791 | CG44239-RA | 236..1147 | 9..913 | 4100 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16955753..16956639 | 9..891 | 3930 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:50:21 has no hits.
FMO09687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:25 Download gff for
FMO09687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veg-RB | 281..1181 | 1..895 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:07:46 Download gff for
FMO09687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-V-RA | 227..1127 | 1..895 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:14 Download gff for
FMO09687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-V-RA | 227..1127 | 1..895 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:14 Download gff for
FMO09687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16955744..16956664 | 1..913 | 96 | -- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:07:46 Download gff for
FMO09687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12843249..12844169 | 1..913 | 96 | -- | Plus |
