FMO09693.5prime Sequence
1048 bp (967 high quality bases) assembled on 2010-11-05
> FMO09693.5prime
CAGTCGACATGAGTGTCTGTGAGAGCAAAGCCGTTGTGCAACAGCAACTG
CAGCAGCACTTGCAGCAACAGGCAGCCGCAGCAGTTGTTGCGGTCCCGCA
ACAGCAGCAGGCTCAAGCCCAAGCCCAGGCTCAGGCTCAGGCACAGCAGC
AGCAACAGGCGCCGCAGGTGGTGGTCCCCATGACCCCGCAGCACTTGACC
CCACAGCAGCAGCAGCAGAGCACACAGAGCATCGCCGACTATCTGGCCCA
GTTGCTCAAGGACCGCAAGCAACTGGCCGCCTTCCCCAACGTCTTCACCC
ACGTCGAACGCCTGCTGGACGAAGAAATTGCACGCGTGCGCGCCTCACTG
TTCCAGATCAATGGGGTCAAGAAGGAGCCGCTCACTCTGCCCGAACCCGA
GGGCTCTGTGGTGACGATGAACGAGAAGGTTTATGTGCCAGTCCGTTTTT
TATCCAGATTTCAACTTTGTCGGTCGCATTTTGGGACCCCGTGGCATGAC
CGCCAAGCAATTGGAACAGGAGACCGGCTGCAAGATTATGGTCCGAGGCA
AGGGTTCCATGCGCGACAAGAAGAAGGAGGACGCCAACCGTGGCAAGCCT
AACTGGGAGCATCTGTCCGATGACCTGCATGTCCTGATAACCGTCGAGGA
CACCGAGAACCGTGCCACAGTGAAGTTGGCCCAGGCCGTCGCCGAAGTAC
AGAAGTTGCTCGTGCCGCAAGCCGAAGGCGAAGATGAGCTAAAGAAACGT
CAACTCATGGGAATTGGCGATTATTATGGCACTTATAGGGACACAACAGC
GAAATCTGTCGCAGTGTGCGATGAGGAGTGGCGCCGCCTGGTTGCCGCCT
CTGATAGCCGCCTGCTGACATCCAACCGGCCTGCCAGGCCTTGCCGCCCA
AATCCGTGCACCCGCCGCCGCCCCGCTTGGCCCCCATTAGATCCTGAATC
CCCGGAAGAACCGTCCCCCAACGACGGCCGCATTTGTCGGCCCAGCCGCG
CTCCAAAGCCGCCCTTCCACATACCGCGCATGGATAGACTCTCTTCCC
FMO09693.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| how-RB | 1759 | CG10293-RB | 323..1327 | 9..1013 | 4560 | 97.5 | Plus |
| how-RC | 2181 | CG10293-RC | 323..1327 | 9..1013 | 4560 | 97.5 | Plus |
| how-RD | 3884 | CG10293-RD | 323..1327 | 9..1013 | 4560 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22043064..22043379 | 9..324 | 1565 | 99.7 | Plus |
| 3R | 32079331 | 3R | 22070805..22070947 | 575..717 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 22062723..22062845 | 323..445 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 22071734..22071902 | 810..979 | 605 | 91.8 | Plus |
| 3R | 32079331 | 3R | 22069111..22069228 | 460..577 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 22071332..22071429 | 717..814 | 395 | 98 | Plus |
Blast to na_te.dros performed 2014-11-26 16:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2512 | 38..217 | 171 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6858 | 73..217 | 157 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2467 | 24..217 | 154 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2502 | 98..299 | 133 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6827 | 132..233 | 132 | 62.3 | Plus |
FMO09693.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-15 11:12:30 Download gff for
FMO09693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| how-RC | 315..1308 | 1..995 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:03 Download gff for
FMO09693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| how-RD | 316..1309 | 1..995 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:32 Download gff for
FMO09693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| how-RD | 316..1309 | 1..995 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:38:32 Download gff for
FMO09693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22071739..22071899 | 815..976 | 94 | -> | Plus |
| 3R | 22043057..22043379 | 1..324 | 98 | -> | Plus |
| 3R | 22070807..22070947 | 577..717 | 100 | -> | Plus |
| 3R | 22062725..22062844 | 325..444 | 100 | -> | Plus |
| 3R | 22069095..22069227 | 445..576 | 94 | -> | Plus |
| 3R | 22071333..22071429 | 718..814 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:03 Download gff for
FMO09693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17896529..17896669 | 577..717 | 100 | -> | Plus |
| arm_3R | 17897055..17897151 | 718..814 | 97 | -> | Plus |
| arm_3R | 17897461..17897621 | 815..976 | 94 | -> | Plus |
| arm_3R | 17868779..17869101 | 1..324 | 98 | -> | Plus |
| arm_3R | 17888447..17888566 | 325..444 | 100 | -> | Plus |
| arm_3R | 17894817..17894949 | 445..576 | 94 | -> | Plus |
