FMO09703.5prime Sequence
1128 bp (979 high quality bases) assembled on 2010-10-20
> FMO09703.5prime
CAGTCGACATGTCGCGGAAGAATGTCTTAGGTTTGATCAACACGATCGTG
GCCAACTCCTGCAAGTGCCCCGCCCATTCGCATAACTATGGCTCAGCAGC
TCCAACCGCCTCCCAAACGGGTCGCATGGAATACGCCTTCGAGATGTCAG
CCTCGACTGTTCGATTTGGACCGGGAGTAAGTGCCGAAGTGGGAGCCGAT
CTTCGCAACTTGGGAGCTCGGAAGGTTTGTTTGGTCACGGATAAAAATGT
CGTGCAATTGCCCTCCGTGAAAGTGGCCTTGGATTCACTGGCTCGTAATG
GCATCAACTACGAAGTCTATGATGAAACCCGGGTGGAGCCCACGGATGGG
AGCATGTGGCATGCCGTGGAGTTTGCGCGCGGCAAGGAGTTCGATGCATT
TCTGGCCATCGGAGGAGGATCTGCCATGGATACAGCCAAGGCAGCTAATC
TTTTTAGCAGTGATGCAAATGCAGAGTTTTTGGATTATGTAAACTGCCCA
ATTGGCAGAGGCAAGGAGATATCCGTAAAACTGAAGCCCCTGATTGCGAT
GCCCACCACTTCGGGAACAGGTTCCGAAACCACTGGAGTAGCTATATTTG
ATTACAAGAAGTTGCATGCCAAAACTGGGATTTCCAGCAAGTTCCTCAAA
CCTACTTTGGCTGTGATTGATCCTCTGCACACCCTATCCCAGCCGCAACG
CGTGATGGCTTTCGCTGGCTTTGATGTGTTCTGCCATGCCCTGGAGAGTT
TCACGGCGGTGGATTACAGGGAACGCGGTTTGGCGCCCAGTGATCCCAGC
TTTGAGACCCACCTACCAGGGCAGGAACCCAGTGTCGGATGTGTGGGCAC
GATTCGCATTGGAGACGATAAGGAAAAACTTTGTGAACGTCATTTACCAG
CCCGATAACCTAGAAGCCCGATCCCAGTTGCACCTGGCTTCCACATGGCT
GGCGTGGGGATTTGGTAATGCCGGAGTGCACCTGTGTCATTGCCTTTCCT
ATCTATTTCTGGAAATGTGAGGGATTACAGCCAAAGGCTACTCTCGCGAA
TCCGCCTTTTTATTTCACACGCCTATCCGGTGGTGATTCATGCTCGGTCG
GTCTTTGAGTTTCACTTGCCTCCAGCTG
FMO09703.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T3dh-RA | 1959 | CG3425-RA | 29..1144 | 9..1127 | 5095 | 97.8 | Plus |
| pgc-RA | 1211 | CG32885-RA | 342..569 | 1127..898 | 690 | 90.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22331258..22331634 | 518..142 | 1885 | 100 | Minus |
| 2R | 25286936 | 2R | 22330636..22331005 | 1029..660 | 1615 | 98.1 | Minus |
| 2R | 25286936 | 2R | 22331062..22331205 | 660..517 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 22331848..22331932 | 143..59 | 425 | 100 | Minus |
| 2R | 25286936 | 2R | 22331995..22332044 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:50:34 has no hits.
FMO09703.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:20 Download gff for
FMO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T3dh-RA | 10..1034 | 1..1029 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:00 Download gff for
FMO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T3dh-RA | 25..1049 | 1..1029 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:58 Download gff for
FMO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T3dh-RA | 25..1049 | 1..1029 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:58 Download gff for
FMO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22330636..22331004 | 661..1029 | 98 | <- | Minus |
| 2R | 22331062..22331203 | 519..660 | 100 | <- | Minus |
| 2R | 22331258..22331632 | 144..518 | 100 | <- | Minus |
| 2R | 22331848..22331932 | 59..143 | 100 | <- | Minus |
| 2R | 22331995..22332048 | 1..58 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:00 Download gff for
FMO09703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18218141..18218509 | 661..1029 | 98 | <- | Minus |
| arm_2R | 18218567..18218708 | 519..660 | 100 | <- | Minus |
| arm_2R | 18218763..18219137 | 144..518 | 100 | <- | Minus |
| arm_2R | 18219353..18219437 | 59..143 | 100 | <- | Minus |
| arm_2R | 18219500..18219553 | 1..58 | 93 | | Minus |
