FMO09706.5prime Sequence
1164 bp (1027 high quality bases) assembled on 2010-10-20
> FMO09706.5prime
CAGTCGACATGGGCATCAATTGCCTTAACATCTTCAGACGTGGCCTCCAC
ACGAGTTCCGCCCGATTGCAGGTGATCCAGAGCACCACGCCCACCAAGCG
GATATGCATCGTAGGCGCCGGACCCGCCGGCTTCTATGCCGCCCAATTGA
TCCTCAAGCAGCTGGACAATTGCGTGGTGGATGTGGTCGAGAAGCTGCCG
GTTCCCTTCGGACTGGTGCGCTTTGGCGTTGCGCCCGATCATCCGGAGGT
CAAGAACGTAATCAACACCTTCACCAAGACCGCCGAGCATCCGCGTCTGC
GTTACTTTGGCAACATATCGCTGGGTACGGATGTCAGCCTGCGTGAGCTA
AGAGATCGATACCATGCCGTGCTCCTCACCTACGGAGCGGACCAGGATCG
GCAACTAGAGCTGGAGAACGAGCAGTTGGATAATGTGATATCAGCCCGGA
AATTTGTGGCCTGGTATAATGGATTGCCGGGTGCGGAAAACTTGGCTCCG
GATCTGAGCGGTCGCGATGTCACGATTGTGGGTCAGGGAAACGTGGCTGT
GGATGTGGCTAGGATGCTGCTCAGTCCCTTGGATGCTTTGAAGACTACGG
ACACAACTGAGTACGCCTTGGAAGCGCTTTCTTGCAGCCAAGTGGAACGA
GTCCATTTGGTTGGCCGACGAGGTCCTCTGCAAGCTGCCTTCACCATTAA
GGAGCTGAGGGAGATGCTCAAGCTGCCCAATGTAGACACTCGGTGGCGTA
CAGAGGATTTCTCGGGCATTGACATGCAGCTGGATAAACTTCAGCGGCCT
CGCAAGAGACTTACCGAACTGATGCTTAAGAGTCTAAAGGAGCAGGGCAG
GATCTCTGGCTCAAAACAATTCCTGCCCATCTTTCTGCGCGCTCCGAAGG
CGATAGCCCCAGGGGAAATGGAGTTTTCTGTCACGGAACTGCAGCAGGAA
GCAGCAGTGCCCACCAGTTCCACAGAGCGTCTTCCCTCGCACTTAATCCT
GCGCAGCATTGGCTAACAATCTAGTTGGGGGGATACGGGCATCAACTTTG
ACACTCGTACGCGGTCGCGTTCCCAACATTAAATGGTCGTATTCTTAGGA
ATGAATGCTACGGGGAGAGTTGACCTGGACTTATGTAGCTGGCTGGCTAG
GGACTGGCCATGGG
FMO09706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dare-RA | 1681 | CG12390-RA | 158..1305 | 9..1157 | 5450 | 98.6 | Plus |
| CG30033-RC | 572 | CG30033-RC | 217..428 | 220..9 | 1060 | 100 | Minus |
| CG30033-RB | 1002 | CG30033-RB | 217..428 | 220..9 | 1060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11292046..11292419 | 593..220 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 11291370..11291761 | 1157..765 | 1545 | 95.7 | Minus |
| 2R | 25286936 | 2R | 11292806..11293017 | 220..9 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 11291817..11291991 | 766..592 | 860 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:50:38 has no hits.
FMO09706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:20 Download gff for
FMO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dare-RA | 145..1311 | 1..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:01 Download gff for
FMO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dare-RA | 148..1314 | 1..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:00 Download gff for
FMO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dare-RA | 148..1314 | 1..1164 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:00 Download gff for
FMO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11291359..11291760 | 766..1164 | 95 | <- | Minus |
| 2R | 11291818..11291989 | 594..765 | 99 | <- | Minus |
| 2R | 11292046..11292418 | 221..593 | 100 | <- | Minus |
| 2R | 11292806..11293021 | 1..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:01 Download gff for
FMO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7178864..7179265 | 766..1164 | 95 | <- | Minus |
| arm_2R | 7179323..7179494 | 594..765 | 99 | <- | Minus |
| arm_2R | 7179551..7179923 | 221..593 | 100 | <- | Minus |
| arm_2R | 7180311..7180526 | 1..220 | 98 | | Minus |
