FMO09708.5prime Sequence
1083 bp (1053 high quality bases) assembled on 2010-10-20
> FMO09708.5prime
CAGTCGACATGGCATTTCTTTGCCCCGTGCGCATGAGGCGCGACAAGAAG
AAAGCTACAAATGCCAGCATTGAGAGGGACTTACCAGCTGTGGGTGTATT
GGGCATGGGCCGCATAACTGGTTCCTCCAGCATTGAAACACTTGTAAGAG
TGGGCATTGAAAAGGAACACGGTCTAAGTCCTGATTCCAAGATGGTTGTG
CTGCACGACTTTACTCCTTGCGTGGATGATGAACTAGAGGTGAAGCGTGG
ACAGCTGGTTAATATCTTGTACAGAGAGAACGATTGGGTCTACGTGATTG
GTCAGGACTCTAGGCAGGAGGGTTTCATACCCTTCTCTTATTGTGCTCCC
TGCAACACGCAACTGGCGGATTTGGCTGTTAAGAAGAAACTGCCAAGGGA
ACAGTGTCCAGAGCAGCCGATCGAAGAGAATATACCACTTTTGGGCACGG
ATAACAAGCTGGATGTTCTTTGCGATGAAACCTTGAATCCTGGCTCCGCC
AACAGCATAGAGAACACCCTGCTGGTGGAGCCAGAGTGTACTCCTTTCGT
GAAGGAACCCTCCGGGCGCTGTATCGTCTTGTACACCTTTATAGCCAGGG
ACGAGAATGATTTGTCTGTGGAACGGGGTGAATTTGTTACCGTGCTAAAT
CGCGAGGATCCCGATTGGTTTTGGATAATGCGCAGTGATGGCCAGGAAGG
ATTTGTGCCAGCCAGCTTTATTTATCCTGCAGACAGTGTACGAGTTTTGC
AGCAACAGAAAGCCACTTTAAATGCCATGGAGACCATTTTGCAGCAGGGT
CAACAAGGTCAGCAGAGCCAGCAACAGCAGCAGCCTCAATTGGGGCTTGG
GAACAGATGATCTACGCTACCATGGCACGGAGCTGGTGATGCTGTATGAT
TACAAAGCGCAAGCTCCAGACGATCTGTACCTTTCTGTGCGGAGAGGAGA
TTGATTTACGCAGACTTAACCATCAGACTGTGATGGCTGGCTTTGGGCTT
ATGCTCGAAACCCGCAATATGGATTCATCCCGAAAGCCTATGCCCGACCA
CCTCGCGATGACAGCTGCAGCTTTCTAGAACAT
FMO09708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10933-RA | 1402 | CG10933-RA | 132..1189 | 9..1062 | 5100 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17723954..17724834 | 177..1052 | 4080 | 99.1 | Plus |
| 2R | 25286936 | 2R | 17723770..17723895 | 53..178 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 17723440..17723485 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6822 | 749..838 | 129 | 65.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1116 | 791..838 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6859 | 791..839 | 121 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2396 | 791..839 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2381 | 791..839 | 117 | 75 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 145..207 | 785..847 | 117 | 65.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9175..9237 | 785..847 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2836 | 791..838 | 114 | 70.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1150 | 792..839 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6768 | 786..838 | 112 | 67.9 | Plus |
FMO09708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:21 Download gff for
FMO09708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10933-RA | 125..1189 | 6..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:03 Download gff for
FMO09708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10933-RA | 129..1193 | 6..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:02 Download gff for
FMO09708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10933-RA | 129..1193 | 6..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:02 Download gff for
FMO09708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17723437..17723485 | 6..54 | 97 | -> | Plus |
| 2R | 17723772..17723895 | 55..178 | 100 | -> | Plus |
| 2R | 17723956..17724847 | 179..1065 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:03 Download gff for
FMO09708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13610942..13610990 | 6..54 | 97 | -> | Plus |
| arm_2R | 13611277..13611400 | 55..178 | 100 | -> | Plus |
| arm_2R | 13611461..13612352 | 179..1065 | 98 | | Plus |
