FMO09709.5prime Sequence
820 bp (632 high quality bases) assembled on 2010-10-20
> FMO09709.5prime
CAGTCGACATGTCGCAACAGCGCTCCACGGAGCAGATTGCAGCTAGCAAC
AACAACACCAGCGATGTAATAGCGCTGGACGACGACGAGGATACGGATGT
GCAATTCGTTGCAGCTCTGCGTCCCACCGCACCAGTCATCGATCTTTGCG
TCTCGCCCTCCACTTCTGCTGCTGCTGCTGCGGCGGCGGCAGCTGCAGCC
CACTCAGGAGGCGGAAGTGGCGAGGATCCGGCGGTTGGATCCGCATCTGG
AGCTGCTGCTTCGGATACCGATTCACTTGCTTCTTCGCCTGACGAAGGAG
CGTTAGCCACCGGTGTGGATGCAGCGGCAGCCGTTTCTGGCGAAGATTCC
CCCTCTGCAGCGGCCGCTGCCTTGGAGTGTCCCATCTGTTTGCAAACCTG
CATCCACCCAGCTCGTCTCCCCTGTGGCCACATCTTCTGCTTTTTGTGCG
TGAAGGGTGTTGCTTATAAGAACCGCCGTTGTGCTATGTGCCGTCGCGAG
ATTCCCGCCGAGTTCCTGGACCATCCCCAGCTGGTGAATGGCATTGAGGA
CATCTGCACCACTCGCGCGACCGAGGACGGCTTCCAGTGTTATTACGAGG
GAAGAAAACGGTTGGTGGCAGTTCGATGACCGCTCTAGTCAGGACCTCGA
TAGATGCCTTTAAGAAAGGGCGACAAATCCCTGTACAATTTTGGTAGCCG
GCTACGTCTACATTGTGGACTTGGAGCAGCTATTCCAGCAGTGCCAGATG
ACCCCCCTCGCTGCCCGGAGGGTTAAGCGAGACCTAGCCACCCATACCCA
AAAAGGGGGTGGCCGGTCTG
FMO09709.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8786-RG | 3862 | CG8786-RG | 149..956 | 8..820 | 3760 | 98 | Plus |
| CG8786-RC | 1667 | CG8786-RC | 149..956 | 8..820 | 3760 | 98 | Plus |
| CG8786-RB | 1963 | CG8786-RB | 149..956 | 8..820 | 3760 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19642352..19642668 | 324..8 | 1570 | 99.7 | Minus |
| 3L | 28110227 | 3L | 19641067..19641220 | 607..454 | 755 | 99.4 | Minus |
| 3L | 28110227 | 3L | 19641893..19642026 | 456..323 | 670 | 100 | Minus |
| 3L | 28110227 | 3L | 19640113..19640319 | 820..610 | 655 | 93.9 | Minus |
Blast to na_te.dros performed 2014-11-26 14:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2467 | 332..167 | 112 | 53 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2864 | 260..160 | 110 | 59.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1096 | 198..163 | 108 | 77.8 | Minus |
FMO09709.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:22 Download gff for
FMO09709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RC | 138..954 | 1..820 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:05 Download gff for
FMO09709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RB | 140..956 | 1..820 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:03 Download gff for
FMO09709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8786-RB | 140..956 | 1..820 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:03 Download gff for
FMO09709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19640113..19640318 | 611..820 | 93 | <- | Minus |
| 3L | 19641065..19641218 | 456..610 | 98 | <- | Minus |
| 3L | 19641894..19642024 | 325..455 | 100 | <- | Minus |
| 3L | 19642352..19642677 | 1..324 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:05 Download gff for
FMO09709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19635452..19635777 | 1..324 | 98 | | Minus |
| arm_3L | 19633213..19633418 | 611..820 | 93 | <- | Minus |
| arm_3L | 19634165..19634318 | 456..610 | 98 | <- | Minus |
| arm_3L | 19634994..19635124 | 325..455 | 100 | <- | Minus |
