FMO09715.5prime Sequence
257 bp (257 high quality bases) assembled on 2010-10-20
> FMO09715.5prime
CAGTCGACATGTCCGCCTACAAGCTGGAGACCGCCCCGTTCGACCCACGG
TTCCCTAACCAGAACGTGACCCGCTACTGCTACCAGTCGTACATCGACTT
CCACCGCTGCCAGAAGAAGCGCGGCGAGGACTTCGCGCCCTGCAACTACT
TCCAGAAGGTCTACAAGTCGATGTGCCCCAACGCCTGGGTGGAGAAGTGG
GACGACCAGCGCGAGAGCGGCACATTCCCCGGCCGCATCGCAAGCTTTCT
AGACCAT
FMO09715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIb-RD | 678 | CG14235-RD | 73..305 | 7..239 | 1165 | 100 | Plus |
| CoVIb-RB | 554 | CG14235-RB | 98..330 | 7..239 | 1165 | 100 | Plus |
| CoVIb-RC | 706 | CG14235-RC | 101..333 | 7..239 | 1165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19740910..19741142 | 239..7 | 1165 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 622..706 | 23..112 | 105 | 61.1 | Plus |
FMO09715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:37 Download gff for
FMO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14235-RA | 133..376 | 1..246 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:52 Download gff for
FMO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIb-RC | 99..342 | 1..246 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:51 Download gff for
FMO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIb-RC | 96..339 | 1..246 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:51 Download gff for
FMO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19740904..19741147 | 1..246 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:52 Download gff for
FMO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19634937..19635180 | 1..246 | 98 | | Minus |
