FMO09724.5prime Sequence
740 bp (740 high quality bases) assembled on 2010-10-20
> FMO09724.5prime
CAGTCGACATGGCAACAGCAACTGGCTCAAGCTGCTCCACCAGTAACGGC
AGTGGCAGCAGCAGCAACAGCAACCACAACAGCGCTGCGGTGCAGCAACA
TCCGGTGGCATTCATCGAGTTCAAGGACCCACCGACCGCGTCTCAGGCCA
TGCAGCAGCTGCAGGGTAAATATCTGCTCAGCTCCGATCGCGGTTCCATC
CGCATCGAGTTTGCGCGCAGCAAAATGATCAACGAGGTGACCATAATGAA
CACCAAGGCACCGCCACCACCACCACCCACTGCTGTTGCTGCTACTGTTG
CACCACCGCCACCGCCAGCACCCATGTACATCCTGAACGGCGGTGGGGGG
GTCGAGCATTTGCTGGTCCCAGCACCACCGCCGTCGGCACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAACTCCAGATGCAGCAACTGCAACAGCAGATGC
ACCTGCAGCAGCAACATCAACAGCAGCAGCAACTCCAATTGACCGTGGCA
GCACCCTGCACTGCAGCAAGCACCACCACCCACAGCAGCACCACTAGCGT
TGTTGTTAACTCACTACAGCACCACCAACTTCATCATCCAAATCAGCACC
ACCAAAATCATCTCTTTAGAGACCAACAGCAGCAGCATCAACAGCAAGCA
ACAATCAAGCAACAATCAGCAACAACAAAGGAGCGGGTATGGAATCACGG
CATGATTTGCTCGCTAAAAAGCGCAAGCTTTCTAGACCAT
FMO09724.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpo-RR | 7247 | CG43738-RR | 3945..4659 | 8..722 | 3575 | 100 | Plus |
| cpo-RY | 6131 | CG43738-RY | 2831..3543 | 8..722 | 3535 | 99.7 | Plus |
| cpo-RX | 6116 | CG43738-RX | 2869..3484 | 8..623 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18011098..18011713 | 8..623 | 3080 | 100 | Plus |
| 3R | 32079331 | 3R | 18013148..18013191 | 679..722 | 220 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2987 | 12..647 | 318 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2971 | 12..610 | 312 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2984 | 429..678 | 282 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2990 | 385..611 | 275 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2923 | 41..680 | 254 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2959 | 363..549 | 248 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..7210 | 12..493 | 202 | 56.7 | Plus |
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1124..1244 | 559..677 | 193 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6934 | 12..113 | 162 | 67.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1164 | 12..106 | 161 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1163 | 12..83 | 159 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6836 | 12..83 | 158 | 70.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1151 | 13..83 | 153 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6802 | 38..104 | 152 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2853 | 12..102 | 150 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1037..1141 | 2..104 | 150 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7212 | 45..551 | 146 | 54.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3270..3344 | 28..104 | 146 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6887 | 12..83 | 141 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6857 | 12..83 | 140 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2603..3005 | 12..452 | 136 | 53.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2798..2889 | 12..102 | 133 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1520..1584 | 12..74 | 131 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1584 | 16..83 | 130 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1129 | 30..104 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1589 | 36..110 | 111 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2828 | 39..104 | 111 | 67.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 662..727 | 96..30 | 107 | 64.2 | Minus |
FMO09724.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:24 Download gff for
FMO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42457-RA | 2750..3477 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:12 Download gff for
FMO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpo-RN | 2824..3551 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:09 Download gff for
FMO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpo-RR | 3938..4665 | 1..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:09 Download gff for
FMO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18011091..18011713 | 1..623 | 99 | -> | Plus |
| 3R | 18012096..18012150 | 624..678 | 100 | -> | Plus |
| 3R | 18013148..18013197 | 679..728 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:12 Download gff for
FMO09724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13837818..13837872 | 624..678 | 100 | -> | Plus |
| arm_3R | 13838870..13838919 | 679..728 | 94 | | Plus |
| arm_3R | 13836813..13837435 | 1..623 | 99 | -> | Plus |
