FMO09727.5prime Sequence
1157 bp (1016 high quality bases) assembled on 2010-10-20
> FMO09727.5prime
CAGTCGACATGGCCACCGCCACCGTTGGTTCATCCAGATCCGCAACCACA
TCCGCAACCGCATCCGCATGCTCATCCAAATCCAAGAACCTAAAGAATCC
GGCGCCGCAAATAAAAAGGGGACAGCGGATCCTCACGGAGAAACCATTCG
CCTTCGTCTTGAAATCACAGTACCGCCTGGAGCGGTGCGATAACTGCCTG
GAGGCGACCAAGGTGCTGAAGTGCTCCAACTGCAGGTATGTGTCCTACTG
CCACCGCTCATGCCAGATGCAAGCTTGGGGCCAGCACAAGCACGAGTGTC
CTTTCCTCAAGAAGGTGCATCCTCGAGTTGTGCCCGATGCTGCCCGAATG
CTCTGCCGACTGATCCTGCGCCTGGAGCACGGCGGAGACCTGATCCGCGG
CTATTACACCGAGCACGGCTCCCGCAAGTTTCGCGATCTCATGTCCCATT
ACGCCGAAATCAAGAACGATCCCATGCGACTGGAGCACTTGGACTCGCTG
CATGCCGTCCTCACCGATATGATGGCCGAGAGTCCCAGCACGGTGCCAAA
CAAGACGGAACTGATGAGCATCTATGGTCGCCTGATCACCAATGGCTTCA
ATATCTTGGACGCCGAGATGAACTCAATTGCCACGGCCATATATCTGGGC
GTCTCGATTACGGACCATAGCTGCCAGCCAAATGCGGTCGCCACCTTCGA
GGGCAACGAGCTGCACGTCCACGCGATCGAGGACATGGAATGCCTGCACT
GGTCGAAAATCTTCATCAGCTACATCGACCTGCTCAATACGCCGGAGCAG
AGGCGTCTGGACCTCAAGGAGCACTACTACTTCCTATGCGTGTGCAGCAA
GTGCACGGATGCCAAGGAATCGAAAGGAGATGCTGGCTGCCCTGTGTCCC
AATCGCACTGCGGTGCGGGAATCAGTGTGGACCGCAATAATTGCCCGCGA
TGCCGATGCCGGCATCAGTCCCAAGTTTGAGAAATGCCTTCAACGAGGCG
ATGACTCTTGAACCCGGCACAATCTGGAGAAATGAAGACGTTGCCTATCT
TCGATGGTGTGCAAGGTGTGTTCTGGACAGCAGACTGGCGTGTTCCATCC
TCTGATGTGTGGTACGTCAGACGCTCGATGCGGCTTCGAGCAGCATCGAA
ATGGGCC
FMO09727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bzd-RB | 1762 | CG13761-RB | 206..1358 | 5..1156 | 5305 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2607279..2607724 | 1031..582 | 1960 | 98.2 | Minus |
| X | 23542271 | X | 2608171..2608412 | 447..206 | 1210 | 100 | Minus |
| X | 23542271 | X | 2608470..2608671 | 206..5 | 995 | 99.5 | Minus |
| X | 23542271 | X | 2607970..2608103 | 581..448 | 670 | 100 | Minus |
| X | 23542271 | X | 2607109..2607188 | 1134..1057 | 195 | 88.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:00 has no hits.
FMO09727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:43 Download gff for
FMO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bzd-RB | 1..1149 | 9..1157 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:07 Download gff for
FMO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bzd-RB | 202..1358 | 1..1157 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:06 Download gff for
FMO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bzd-RB | 202..1358 | 1..1157 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:06 Download gff for
FMO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2607262..2607724 | 582..1046 | 97 | <- | Minus |
| X | 2607970..2608103 | 448..581 | 100 | <- | Minus |
| X | 2608171..2608412 | 206..447 | 100 | <- | Minus |
| X | 2608471..2608673 | 1..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:07 Download gff for
FMO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2501295..2501757 | 582..1046 | 97 | <- | Minus |
| arm_X | 2502003..2502136 | 448..581 | 100 | <- | Minus |
| arm_X | 2502204..2502445 | 206..447 | 100 | <- | Minus |
| arm_X | 2502504..2502706 | 1..205 | 98 | | Minus |
