FMO09728.5prime Sequence
803 bp (803 high quality bases) assembled on 2010-10-20
> FMO09728.5prime
CAGTCGACATGTCGTCGCCTTTGATCTGCTTGGCCATATTCCAGCTGATT
TTCCAGTTGATCCTGGCCAAGGATTATTCCTGGTGTGATCCAGATTTATG
CGGCAATGGCGTCAGACATATCGCGTGCCGAACAACTGGAAATTTCCACA
GGCGCTGCCAACCAGATGCAGTCCAAGTGGATGTAAGCCGGCACAAGGCG
GATTTCCTGCATGCCCACAACAAGAGGAGGAACTTCCTGGCTCTAGGAAA
AGTGCCAGGCTATTATCCTGCCGCCAGAATGGCCACAATGGTGTGGGACG
ACGAGCTGCAGTACTTGTCCATGCTAAATACCCGCACCTGTAAGTTGGAC
CACGATGATTGCCACAACACCTACCGGTACGCCAACTCGGGTCAGAATCT
GTGTGCCGTGTGGCGTCCACGGAGTCCACATGTGAATGTGACTAGCTTGG
TGGAGGAGTGCCTGGGTCTCTGGTTCAACGAGTTCGATCTGATAGACAGC
AGCTTCATCGATTCTTTTAAAGTCACGCCCATATTTGAGGACTACGGTCA
CTTTGCCGAGTTAAGTGTGGACAAAAACTTCGCCGTGGGCTGCTCCATCA
TGAGATTTACTCGTCCCGACTATCCATCCGTGTATATCTACAACTTTATC
TGCAACTATGCTTCACTCTACGCCTTGGGCGCTCCAGTTTATGAGACTGG
ACGAGCGGCCTCCCGTTGCACCACGGGCAAGAGCCACTTCTATCCGGGAT
TATGTTCCACCCGCGAGGTGTACGATCCCAATTGGGCAAGCTTTCTAGAC
CAT
FMO09728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17974-RA | 1033 | CG17974-RA | 144..920 | 9..785 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21349058..21349307 | 785..536 | 1250 | 100 | Minus |
| 2R | 25286936 | 2R | 21349367..21349612 | 535..290 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 21349670..21349821 | 292..141 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 21350304..21350435 | 140..9 | 660 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baggins | 5453 | baggins BAGGINS 5453bp | 1484..1521 | 166..203 | 109 | 76.3 | Plus |
FMO09728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:43 Download gff for
FMO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17974-RA | 401..1194 | 1..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:10 Download gff for
FMO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17974-RA | 135..928 | 1..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:08 Download gff for
FMO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17974-RA | 135..928 | 1..793 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:08 Download gff for
FMO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21350304..21350442 | 1..140 | 97 | | Minus |
| 2R | 21349367..21349611 | 291..535 | 100 | <- | Minus |
| 2R | 21349672..21349821 | 141..290 | 100 | <- | Minus |
| 2R | 21349050..21349307 | 536..793 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:10 Download gff for
FMO09728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17237177..17237326 | 141..290 | 100 | <- | Minus |
| arm_2R | 17236555..17236812 | 536..793 | 98 | <- | Minus |
| arm_2R | 17236872..17237116 | 291..535 | 100 | <- | Minus |
| arm_2R | 17237809..17237947 | 1..140 | 97 | | Minus |
