FMO09730.5prime Sequence
1142 bp (1044 high quality bases) assembled on 2010-10-20
> FMO09730.5prime
CAGTCGACATGCCTAAGGAAACCGTAATTTTGGCTTACTCCGGTGGCCTG
GACACTAGTTGCGTCCTCAAGTGGTTGCTGGACAAGCAGTATGAGGTCAT
TTGCGTCCTGGCCGATGTAGGCCAGAAGGAAGATTTCACCGCCGCCGAGA
AGAAGGCTCTTAAGATTGGCGCAAAAAAGGTTATCGTGGCCGATGTCAAG
CAGTCCTTCGTCGAGGACTATATCTGGCCGGCCGTACAAATGGGTCTGGT
GTACGAGGAGCGCTATCTACTGGGCACTTCTCTGGCCAGGCCCTGCATCA
GTGTAGCCCTGATGGAGGTCGCCCGCGAGTATGGAGCCAAGTATCTGGCC
CACGGAGCCACCGGAAAGGGAAACGACCAGGTGCGCTTCGAGTTGTGCGC
CTACGCCCTGAAACCGGATCTGAAGATCATCGCTCCCTGGAGGGATGTAG
AATTCTGCTGCCAGTTTCAAGGTCGACAGGACCTCATTGCCTATGCCCAG
CAACACGGAATCGAGGTAAGCGCCAAGCCAGCCACACCCTGGAGCACCGA
TGCCAACATCCTGCACATCAGCTACGAGTCCGGAATACTCGAAGATCCCA
ACACAGTGGCTCCGGAAAATCTCTACGAGATGACAGTCGATCCCCTGACA
AGGGCTCCACGGGATCCGGTTCACTTGGTCATTCAATTTGATCGGGGACT
GCCCTCCAGTGTGGAGGATTTGCCCGGCGGTCGGGTCTACACTAAACCCC
TGGAGATGCTAGATTTCCTCAATAAGCTTGGCGGATCATATGGCATTGGG
CGGATTGACATCGTGGAAAATCGCTTTGTGGGACTGAAGTCCCGGGGGGT
GTACGAGACGCCTGGAGGCACCATCCTCTTTGCTGCCCACCAGGACCTCG
AGGTGTTTGCTTTGGACCGCGAAGTACTCCGCACAAGCAGTTCTCGGGAT
CGCATGGCCGACTACGTGTACAATGGCTTCTGGTTCAGTCCCGAGCAATT
TATGCCCGTAAATTTTATCGAGTTGCCGAGCAGCGGGTCTCGGGAGTCAC
GTGACTGGCCCCAGGCTATGCCTGCATCGCGAAGGCGGCGAGATGTGGGA
GCTCTTACAACGAACAGCCGTATCTTATGAGTTTCATTGTGC
FMO09730.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1315-RB | 1456 | CG1315-RB | 49..1185 | 9..1125 | 5165 | 98 | Plus |
| CG1315-RA | 1409 | CG1315-RA | 49..1185 | 9..1125 | 5165 | 98 | Plus |
| CG31286-RB | 1834 | CG31286-RB | 1021..1742 | 1125..424 | 3090 | 96.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6642633..6643254 | 1041..424 | 2800 | 98.9 | Minus |
| 3R | 32079331 | 3R | 6643864..6644111 | 425..178 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 6644213..6644386 | 182..9 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:09 has no hits.
FMO09730.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:44 Download gff for
FMO09730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1315-RA | 9..1154 | 2..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:12 Download gff for
FMO09730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1315-RA | 43..1188 | 2..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:11 Download gff for
FMO09730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1315-RA | 43..1188 | 2..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:11 Download gff for
FMO09730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6644216..6644392 | 2..179 | 97 | | Minus |
| 3R | 6642530..6643252 | 426..1129 | 96 | <- | Minus |
| 3R | 6643864..6644109 | 180..425 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:12 Download gff for
FMO09730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2469938..2470114 | 2..179 | 97 | | Minus |
| arm_3R | 2468252..2468974 | 426..1129 | 96 | <- | Minus |
| arm_3R | 2469586..2469831 | 180..425 | 100 | <- | Minus |
