FMO09731.5prime Sequence
1129 bp (1015 high quality bases) assembled on 2010-10-20
> FMO09731.5prime
CAGTCGACATGTTGGCCGCTGGCAGCAGTGAGATCACTGACTTTGGGCCA
CACTCGCGCCAACTAACGGCTGGCAACACGCCCAAGCGACCCAACAAGGC
CAGCAGCCACCGTCCTGGTTCTGGTTCTGGTCCTGGCCCAATGACAACTG
GTGGCACCAGCTCAGCGAGCGGTAACGGAAACAGCGGTGGGGCTCTGAAC
GCCATTCCCACGACGAAGGTCGGGAGCGGAGGAGGCGGCGGAGGCGCCAT
GTCCGCCACAACGGTGACTGCGACGACGGGGAAAGCTACTGTAAGCCATG
GCCATAGTCATGGCCACGCTCTGGGGCGCAGCGAGACGAGGAGCGGTCGG
AGCGCAGCAGCTGGACGCTCCAATGTGGACGGATTCGTTGGCGGAATCGA
GACGTACTTGGGCCTCATCGGGTGGCGAAAAAAGTGCCTGTATACCCTGC
TGCTACTGCTGATGCTGCTCATCATCACGAACCTGGTGCTCACCCTCTGG
ATACTCAAGGTGATGGAGTTCTCAACGGAGGGCATGGGGCAGCTTAAAAT
CGTACCCGGTGGCATACAGCTGTCCGGACAAGCGATAATTATGGACATGC
TGCGCGCCTCCACAATCCGTTCGCGGCACGGTCAACCCATTTCCATAGAG
TCATCACGTAACTTTTCAATCAATACACGTGATCCGAATGGCATGATTGA
GAATCATTTATTCCTGGGACACGATAAGTTCGAGTGCCTGTCGGCGGGAT
TTCGCATAAACGACACCAACGGACGCAGCCTGTTCTCCGTGAACCGAGAT
GAAGTCACCATCGGAGCACATGCCCTGCGGATCGACGGCGAAGGTGGCGC
CGTCTTCCGGGAATCCGTGCAGACGCCCCATGTGCGGGCCGAGCCCGGCC
GGGAGCTGAGACTCGAATCGCCCACACGCCAATTGGAGATGACGGCGGCC
AAGGAACATTAATTTGCAATCGCGGGCAGAAGGCATAGAGTCGTGGCCCT
GAGACGTCAGTTCTGAGCCCTCGATGGGAGCTGCCGCCTGAGTCCTCCAA
GATACTTATGCCCACCTGCGACGACCAGCGTCCATCCTGGGCACTGACCA
AGCAGATCAATGCACGCGTCTTTCCACTC
FMO09731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-RE | 2972 | CG14808-RE | 422..1555 | 9..1129 | 5140 | 97.7 | Plus |
| Scgdelta-RD | 2336 | CG14808-RD | 609..1742 | 9..1129 | 5140 | 97.7 | Plus |
| Scgdelta-RC | 2966 | CG14808-RC | 416..1549 | 9..1129 | 5140 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1749894..1750413 | 528..9 | 2600 | 100 | Minus |
| X | 23542271 | X | 1748032..1748302 | 910..640 | 1325 | 99.3 | Minus |
| X | 23542271 | X | 1749697..1749818 | 648..527 | 610 | 100 | Minus |
| X | 23542271 | X | 1746687..1746812 | 1031..909 | 375 | 93.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:12 has no hits.
FMO09731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:45 Download gff for
FMO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RA | 389..1473 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:14 Download gff for
FMO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RA | 415..1499 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:13 Download gff for
FMO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RC | 409..1493 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:13 Download gff for
FMO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1746687..1746810 | 911..1031 | 93 | <- | Minus |
| X | 1748032..1748293 | 649..910 | 100 | <- | Minus |
| X | 1749697..1749817 | 528..648 | 100 | <- | Minus |
| X | 1749895..1750417 | 1..527 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:14 Download gff for
FMO09731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1640720..1640843 | 911..1031 | 93 | <- | Minus |
| arm_X | 1642065..1642326 | 649..910 | 100 | <- | Minus |
| arm_X | 1643730..1643850 | 528..648 | 100 | <- | Minus |
| arm_X | 1643928..1644450 | 1..527 | 99 | | Minus |
