FMO09733.5prime Sequence
1168 bp (1061 high quality bases) assembled on 2010-10-20
> FMO09733.5prime
CAGTCGACATGGTTCTTCGGGTGGAAAAATTTCTACTGCTAGCGATAGCT
ATTGGCGCCGTAATGGGCAGCTCCCAGGGAGCTAATATTCTAGGACTCTT
CCCGAGCCTGAGTCCCTCGCACTTGATCATCCAAATGTCCGCGGCCAAAG
TTCTGGCCGAGAATGGACACAATGTGACGGTGGTCACCGTGCTGAAGCCA
GTGGTTAACCATAAAAACATAACCGTGATCCAAGTGCCGCTTAGTAAGGA
AGAAGCCCAGCAAATGAGCGATACGATTGGAGCGATGTCCAAGAACGACA
ATAGCAACATGGCCTTATCCCTGCTCCGGATGTCGGATCAAATGGATTTC
ATGATCAGAAAGAATGCCGAGACCCTGATGAACGATCGAGTGAGGGATCT
GTACCTGAACCGTGGAAACAAGTTCGACCTGGTTATTTCTGGATACTTTA
TGAACGATTTCCAGCTCGGATTCGCAAGGAAAGTCAACGCACCCGTCATC
GTATTGGCCACAATGCCTCCCAATCATCTATTGAACCCCCTGATCGGTAA
TCCCCTGGAGGTTTCCTATGCCGGAATCAGTAATCCTGCAGAGGGCAGTA
AAGCCGTAACCTTCCAACGGCGTTTATCCAGCTATATGCAAAGCCTCGGT
TTCGGTGTCTTTTCTCATCTTTCCGAGCGGCGTAATCGAAATTGGTACAA
GGAAGTTTATGGCAACGATCCCAAAATGCCTGAGTACTCGGAAATGCTCA
AGAACACATCGTTGGTTTTCTTCAGTTCGCACGCGGCCAGTGAAGGACCT
ATTAGACCTAATGTTCCTTCTGCCATAGAAATCGGTGGAATTCAGATTAA
GGACAAGCCGGATCCCCTTCCCAAACATTGCGGAGTTTTGGGCAATGCTA
CAGATGGAGCTATTCTCCTCTCCCTGGGTTCTAATGTCCAGGGAAAGCAT
CTAAACCCAGACACAGTTGCCAGATGTTCAACGTCCTTTCAAACTGAAAG
AAAGGTGATTGGAAGTGGGGGACCAGAAGAATACGCCAAGGGAAATCAGC
TAATAATTCTTTACTCGAGTGCTCCGCAGGACGAATATTTCTGGCCCCCC
ACATCAAGCTATTCATTCAACCAGCCGAAGTGCCATATCTGAATTCATAG
TTACATGAAGCCATGCCT
FMO09733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5999-RB | 1667 | CG5999-RB | 1..1128 | 5..1123 | 5150 | 98 | Plus |
| CG5724-RA | 1710 | CG5724-RA | 93..1038 | 84..1019 | 1125 | 75.8 | Plus |
| Ugt37a1-RA | 1623 | CG11012-RA | 66..182 | 84..200 | 225 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12742979..12743680 | 706..5 | 3465 | 99.6 | Minus |
| 3R | 32079331 | 3R | 12742555..12742928 | 1068..701 | 1385 | 96.8 | Minus |
| 3R | 32079331 | 3R | 12739734..12740220 | 84..570 | 965 | 79.9 | Plus |
| 3R | 32079331 | 3R | 12740436..12740691 | 717..969 | 310 | 76.6 | Plus |
| 2L | 23513712 | 2L | 20373902..20374018 | 200..84 | 225 | 79.5 | Minus |
| 2L | 23513712 | 2L | 6225134..6225239 | 73..178 | 200 | 79.2 | Plus |
| 2L | 23513712 | 2L | 16794288..16794414 | 73..199 | 200 | 77.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:53:19 has no hits.
FMO09733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:46 Download gff for
FMO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5999-RA | 1..1075 | 63..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:18 Download gff for
FMO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5999-RB | 1..1133 | 5..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:17 Download gff for
FMO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5999-RB | 1..1133 | 5..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:17 Download gff for
FMO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12742499..12742928 | 701..1121 | 95 | <- | Minus |
| 3R | 12742985..12743683 | 1..700 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:18 Download gff for
FMO09733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8568221..8568650 | 701..1121 | 95 | <- | Minus |
| arm_3R | 8568707..8569405 | 1..700 | 99 | | Minus |
