FMO09739.5prime Sequence
593 bp (593 high quality bases) assembled on 2010-10-20
> FMO09739.5prime
CAGTCGACATGCTCCGGACTTTTCGTCAAATAGCCCGACTAGGAAGATCC
CTAAGGACGCCATTTCCATCTAAAAGTCTGCCTAAACTCTCAACCACCTT
AGAGCTGCAGGCTCCTGTACACACCAGTGCTTCAGCGTGGAAGTACGACA
AGAAATCCTCACGAGCATCGGATGACTTGGACAGCGACGACGAGGATGAT
GAGGATTTCAAGGACGAAAGGGACTCCAAGGTGGTCAAGACCAAGGTGAA
CTCACTGCGCGCCGATCTCCTACTGAAAGCTGGCCTGGGCATGGCGAGAA
ACAAAGTGGAACTGAATTTCTACGAGAGCAAGATACGCGTCAATGGAAAG
AAGCTGCCCAAAAAGAGTGCCCAGCTGGAAGTCGGCGATGAAATCGACGT
AATCCGAGGCTTTAGTCAATCGAATCCTTCCCATCTGGTCGTGGCCCGCG
TCTCAATCCTCTCCGTCAGCGAGCGCGAGGAAGGACTCAGCGTCCACCTG
AGGCGCTACAAATCCCTGCTGGTCGAGAATTACCGGGGACCCAACGCCTT
CAAATCCTCAGAGCACGTTGCTCATGCAAGCTTTCTAGACCAT
FMO09739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42487-RA | 1718 | CG42487-RA | 1089..1655 | 9..575 | 2835 | 100 | Plus |
| CG4884-RB | 1718 | CG4884-RB | 1089..1655 | 9..575 | 2835 | 100 | Plus |
| CG4884-RA | 649 | CG4884-RA | 48..614 | 9..575 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27957807..27958099 | 301..9 | 1465 | 100 | Minus |
| 3R | 32079331 | 3R | 27957419..27957622 | 575..372 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 27957672..27957744 | 374..302 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:33 has no hits.
FMO09739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:49 Download gff for
FMO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4884-RA | 146..723 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:26 Download gff for
FMO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4884-RA | 479..1056 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:23 Download gff for
FMO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4884-RA | 40..617 | 1..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:23 Download gff for
FMO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27957415..27957619 | 375..579 | 99 | <- | Minus |
| 3R | 27957672..27957744 | 302..374 | 100 | <- | Minus |
| 3R | 27957807..27958105 | 1..301 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:26 Download gff for
FMO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23783137..23783341 | 375..579 | 99 | <- | Minus |
| arm_3R | 23783394..23783466 | 302..374 | 100 | <- | Minus |
| arm_3R | 23783529..23783827 | 1..301 | 98 | | Minus |
