Clone FMO09741 Report

Search the DGRC for FMO09741

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:97
Well:41
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42394-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09741.5prime Sequence

257 bp (257 high quality bases) assembled on 2010-10-20

> FMO09741.5prime
CAGTCGACATGTGCAAGTGTCTGGTCGGAAACGTTGCCTGCTGCTGCTGC
AGTTGTGCAATTAGTGTGCTTGTTTCAATCATCAGTGGATTGCTGGTGGT
CGGCATTGTGGTCGGATTGGCCGTCTACTTTCTTGTCTACTACGAACCGG
AGGATGAGGTTACCAAGTTCACCAATAAATTAGCCGAAAGTGTACAGTCG
GGATATGGCAAAATTAAGGATGTCATAAGCAAATTAAATGCAAGCTTTCT
AGACCAT

FMO09741.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG42394-RC 634 CG42394-RC 94..326 7..239 1165 100 Plus
CG42394-RB 503 CG42394-RB 23..255 7..239 1165 100 Plus
CG42394-RD 582 CG42394-RD 94..326 7..239 1165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10851284..10851480 43..239 985 100 Plus
3R 32079331 3R 10849983..10850019 7..43 185 100 Plus
Blast to na_te.dros performed 2014-11-26 14:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 825..900 75..3 103 61.8 Minus

FMO09741.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:50 Download gff for FMO09741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42394-RA 12..254 1..245 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:30 Download gff for FMO09741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42394-RA 18..260 1..245 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:26 Download gff for FMO09741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42394-RD 89..331 1..245 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:26 Download gff for FMO09741.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10851285..10851485 44..245 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:30 Download gff for FMO09741.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6677007..6677207 44..245 98   Plus