FMO09743.5prime Sequence
1098 bp (1061 high quality bases) assembled on 2010-10-20
> FMO09743.5prime
CAGTCGACATGGCGCCCGTTTCAAAACGCCGTTTACCGAAAAAATCGAAT
ACAAATGTAAAAGTAACGAGCACACTTTCGAAAATTATAATGCAAGGAAC
TGAACAGTTGTTGGACTCGGGAAATAATACAAATATTCATGTTATTGAAA
AACCCCGAATGGTGCGGTATTCAAATTCATCGCTTTACAGTGCGTTAGCC
GAGGGCCATTCCACACCGGAAATAAATATTGTGGCAAGTAATAGCAACGC
ACATGGCAAGGTAGAGCTTAATTCTGAAATCAGCGATATGTCTATTGCAT
CAGTGTCGGTGAGAAATAAACCGTTTGTGAACTTTCTCCAGGATTTCTCC
ATAGCTCATGGTTCCGTACCCCGAGAAAGTATTCAGCAGGCCATCGTCGA
GTGGGATAAACTGACAGCTGAGCAAAAACAAGAATATACTCCTGAAAACT
ACGTTCTAAAATTATGTGATCAAGTGCATAATCGTGACGAAATTTTAAAT
GCAGCTACACTGCATCCGGTATATCCAATTACAACCAAAATACAGAATGC
ATTTAATGAAGCCAGTACGTCCATGAAATCTGAAAAGTATGCGAAGAAGA
TCTCGTCCCCAAAAATACGTAAGACAATTAAGCGTTTAAAACCAAAACCA
CGAGTTCTGGTGACTCCCAGAAAATCAGCCAAAAATGCTGGCAAAAAGAA
TATAATTTATAGTGGTTCGGCTTACAAAAACTTTCTGCGAAAAACCGGTC
AAGCCAATCCCGGTCTGATGATTGTGGAAAAGGCCTCATTATGGCGTAAA
ATGACTCCTGCCGAAAGGGATCTCTATCGGAATGTGAGCAGACCAAGGCG
CCAGAACACCAAAGTATCCAGAGTTGACGCTCCCAAGCGCGAAAAGAAGC
GTAAAACCTCACAGTTCACCCAGATTTCAGAAAGTGATTTTTCGGAAACT
AATTTCATATTCAGCGAGATGGCCAGCTAGAGTTTGGAATGAAGTACAAA
TTCCCTAGAGGAGGCAAACGGCTCTGGTCAATTTGGAAAACATTGCTAAA
GCACTTGGAACAGTCAGAAGTATATTTAAAGGCAAGCTTTCTAGAACA
FMO09743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst33A-RB | 1328 | CG6541-RB | 158..1234 | 9..1080 | 5170 | 99.1 | Plus |
| Mst33A-RA | 1342 | CG6541-RA | 172..1248 | 9..1080 | 5170 | 99.1 | Plus |
| Mst33A-RC | 1261 | CG6541-RC | 422..1167 | 340..1080 | 3515 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11585527..11586603 | 1080..9 | 5050 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:45 has no hits.
FMO09743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:50 Download gff for
FMO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RB | 5..1093 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:33 Download gff for
FMO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RA | 165..1253 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:28 Download gff for
FMO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RA | 165..1253 | 1..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:28 Download gff for
FMO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11585522..11586609 | 1..1088 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:33 Download gff for
FMO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11585522..11586609 | 1..1088 | 98 | | Minus |
