FMO09744.5prime Sequence
1171 bp (1078 high quality bases) assembled on 2010-10-20
> FMO09744.5prime
CAGTCGACATGGCCATGATACCAACCACCTACAACGAAAAGGATAATATC
TGGAGTGGAGCCAAGCGTAACTCCATCTACAACTATGACACCTCCGTGGG
CAAGATCATCTTCAACAACATGAAGAACTGGCCCAAGAATGTGTGCCAGA
TATGTGATGTAGATGGAGTGACTGTCACCTTCGAGCAGGGTCTCACCTGG
TCCATCCGGATTGCGCAGTACCTTAAGAAGAGGGGTCTTAACCACAAGGA
TGTCATTGGAATTGCAGCCAAAAACTCAACCTATGTGATGCCCCTTGGAG
TGGCCTGTTTGATGAATGGCACCCCATTCCATTCGGTTAATCCTGTGCTA
GATGATGCAACCTTGACGCATGTGTTTTCGATCACAAAGCCCACACTGAT
ATTTTGTGATGGACAAGAGTACGATAAAGTGCATAAGGCTACGGTAGGAT
GGCATCCGGAAATCCTTACCCTCACGGATCATGTGGAAGGAGTCCAGGGC
ATCGAGACCTTGCTGGATCCCACCACTACAGAAAAGATATATCAACCGGA
AGTGTTGAAGGAAGGAGGTGATCAAACCGTAGCCATCCTATGCTCCTCTG
GAACCACTGGTTTGCCCAAGGCCGTCTGCATTTCCAACAGCATTCTGATC
CAAGACAGCATGTTGATCACCAGTCAGTCGGTTATCTATGTAGGAAGCTG
TCTGGACTGGATCACGGGCTTGTGGGCCTTTGTGTTCAGCACCGTATTCG
GTTGCACCCGCATTATCAGTAACAAAGCCTTCACTCCGGAGTACTTTGTG
GGACTGGTGAAGAAATACAAGATCAACTATGCTGTGCTGCCGCCGCGTCA
TCTGTCCGCTCTGATCACCTGTCCGGATGCGAAGCCGGATGCACTGGCTC
CCATCACGCACCTCAACTACGGCGGAGGATCGATATCGTTGGCCACCCTG
CAGCGGTCGCAGGAACTCTGCAGACAGCCATGTTCATTCGGGATACGGGA
TGACAAGAGTGGGGCGCCATCACGATCAATATCGGATCAGCACGTTCTCC
GTCCGCGGCAGCCTGTTGCCGGGCATTAAGAATTCGTATCGTGATGAGAT
GGCAAGAGCTGGGCTACACCAGGTGGGAGGATTAGTGTCACACGGTCAGC
CTGAACCGTACTACGCAATCC
FMO09744.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8834-RA | 1832 | CG8834-RA | 51..1227 | 7..1171 | 5270 | 97.7 | Plus |
| CG4830-RA | 1861 | CG4830-RA | 152..390 | 105..343 | 310 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12421226..12421601 | 1036..662 | 1705 | 98.7 | Minus |
| 2R | 25286936 | 2R | 12422080..12422291 | 357..146 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 12421837..12422024 | 544..357 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 12422343..12422485 | 149..7 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 12421658..12421776 | 663..545 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 12209900..12210069 | 343..174 | 190 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:49 has no hits.
FMO09744.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:51 Download gff for
FMO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8834-RB | 1..1149 | 9..1149 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:35 Download gff for
FMO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8834-RA | 47..1201 | 1..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:31 Download gff for
FMO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8834-RA | 47..1201 | 1..1149 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:31 Download gff for
FMO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12421660..12421776 | 545..661 | 100 | <- | Minus |
| 2R | 12421837..12422023 | 358..544 | 100 | <- | Minus |
| 2R | 12422080..12422287 | 150..357 | 100 | <- | Minus |
| 2R | 12422343..12422489 | 1..149 | 97 | | Minus |
| 2R | 12421106..12421601 | 662..1149 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:35 Download gff for
FMO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8309585..8309792 | 150..357 | 100 | <- | Minus |
| arm_2R | 8308611..8309106 | 662..1149 | 95 | <- | Minus |
| arm_2R | 8309165..8309281 | 545..661 | 100 | <- | Minus |
| arm_2R | 8309342..8309528 | 358..544 | 100 | <- | Minus |
| arm_2R | 8309848..8309994 | 1..149 | 97 | | Minus |
