Clone FMO09746 Report

Search the DGRC for FMO09746

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:97
Well:46
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSfp33A1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09746.5prime Sequence

305 bp (305 high quality bases) assembled on 2010-10-20

> FMO09746.5prime
CAGTCGACATGAAGTTCTTCATTTTGATTTCATTCTTACTGGTCTGTCAA
GGGTCCAACGAAGAGGAGGATAACATAATAGCCGAGTTGTGCTTCAATCC
GAATTCTGGACCTCCTTGCCAGAAATTAAAAACATATTATTGGGATAAGG
AAAAGAATCGATGCGTGCTCTCTCGGTATTTAATGCAGCCTTGTGGTTTC
TTTGACACAATAGACATGTGCGATAAAATATGCACCAAGGAATCGTGGAC
AATATCTCATTTGGAAGTATATGTTCGAAATATGCCTGCAAGCTTTCTAG
ACCAT

FMO09746.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp33A1-RA 359 CG42472-RA 20..302 5..287 1400 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11754142..11754345 287..84 1020 100 Minus
2L 23513712 2L 11754404..11754483 84..5 385 98.8 Minus
Blast to na_te.dros performed on 2014-11-26 14:53:23 has no hits.

FMO09746.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:47 Download gff for FMO09746.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 17..305 1..291 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:20 Download gff for FMO09746.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 17..305 1..291 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:18 Download gff for FMO09746.5prime
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 17..305 1..291 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:18 Download gff for FMO09746.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11754138..11754344 85..291 99 <- Minus
2L 11754404..11754486 1..84 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:20 Download gff for FMO09746.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11754138..11754344 85..291 99 <- Minus
arm_2L 11754404..11754486 1..84 96   Minus