FMO09753.5prime Sequence
1174 bp (1040 high quality bases) assembled on 2010-10-20
> FMO09753.5prime
CAGTCGACATGGCGGACGACGAGCAATTCAGCTTGTGCTGGAACAACTTC
AACACGAATTTGTCGGCCGGCTTCCACGAGTCGCTATGCCGCGGCGACCT
GGTGGACGTCTCGCTGGCCGCCGAGGGCCAAATAGTGAAGGCCCACCGAT
TGGTGTTATCCGTCTGCTCGCCCTTCTTCCGCAAGATGTTCACTCAGATG
CCGTCGAACACCCACGCTATCGTATTCCTGAACAACGTCAGCCACTCGGC
GCTGAAGGACCTCATCCAATTCATGTACTGCGGCGAGGTCAACGTGAAGC
AGGACGCCCTGCCCGCGTTTATTAGCACCGCGGAATCGCTGCAAATCAAG
GGGCTAACGGATAACGATCCTGCGCCTCAGCCGCCGCAGGAATCCAGCCC
GCCGCCAGCAGCACCTCATGTACAACAACAGCAAATACCGGCTCAGCGGG
TGCAGCGCCAGCAGCCTCGCGCCTCCGCCCGCTACAAGATCGAGACCGTG
GACGACGGCCTGGGCGACGAGAAACAGAGCACCACCCAGATCGTCATCCA
GACCACGGCCGCACCCCAAGCCACCATTGTACAACAGCAGCAACCGCAGC
AGGCGGCGCAGCAGATCCAATCGCAGCAGCTGCAGACGGGAACCACGACG
ACGGCGACGCTGGTGTCGACAAACAAACGCTCTGCCCAGCGCTCCTCCCT
GACCCCCGCCTCCTCGAGCGCCGGCGTAAAGCGCTCCAAGACAAGCACCT
CCGCAAATGTTATGGACCCTCTCGACTCGACCACTGAAACTGGAGCCACG
ACAACCGCCCAACTTGTGCCGCAACAGATCACCGTGCAAACCTCTGTGGT
CTCTGCGGCAGAAGCAAAGCTCCACCAGCAATCGCCGCAGCAGTTCGACA
GGAGGAGCCGAGTACATTGATCTCCCCATGGATTGCCCACGAATCTGACC
TGACTACTCTGAGACCATGGCCGACGCCGCCGGCGATGCCGAGGGCACCT
ATGTGGAGTACGATACTTACCGAGACATGCGCTACGACGAAAGGCTACTT
CACTGAACGAGGATGCTGGCCACCAGAACTGCGTCAATACGACGTGGGCG
GATGACGCGACACTTCAAGGCTGTGGTCCAGCACAGGTCCGACTAGGAAT
ACTCGTGGCACACCACGGAATCAG
FMO09753.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-RAF | 1839 | CG32491-RF | 159..1294 | 9..1133 | 5160 | 97.8 | Plus |
| mod(mdg4)-RAE | 1596 | CG32491-RAE | 157..1292 | 9..1133 | 5160 | 97.8 | Plus |
| mod(mdg4)-RAD | 1689 | CG32491-RAD | 157..1292 | 9..1133 | 5160 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21375192..21375912 | 1077..363 | 3095 | 97.5 | Minus |
| 3R | 32079331 | 3R | 21376819..21377032 | 222..9 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 21376602..21376742 | 362..222 | 705 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6922 | 403..635 | 181 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2883 | 552..658 | 138 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2421 | 581..658 | 134 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6848 | 522..655 | 130 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2397 | 581..652 | 130 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6809 | 581..658 | 125 | 63.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1157 | 581..658 | 125 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1602 | 520..648 | 122 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6843 | 528..634 | 119 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1144 | 515..602 | 115 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6805 | 581..635 | 113 | 67.3 | Plus |
FMO09753.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:54 Download gff for
FMO09753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RI | 149..1299 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:45 Download gff for
FMO09753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RAD | 149..1299 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:37 Download gff for
FMO09753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RAD | 149..1299 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:37 Download gff for
FMO09753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21376602..21376741 | 223..362 | 100 | <- | Minus |
| 3R | 21376819..21377040 | 1..222 | 98 | | Minus |
| 3R | 21375124..21375912 | 363..1140 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:45 Download gff for
FMO09753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17200846..17201634 | 363..1140 | 96 | <- | Minus |
| arm_3R | 17202324..17202463 | 223..362 | 100 | <- | Minus |
| arm_3R | 17202541..17202762 | 1..222 | 98 | | Minus |
