FMO09756.5prime Sequence
1113 bp (1038 high quality bases) assembled on 2010-10-20
> FMO09756.5prime
CAGTCGACATGCAGACGCAGCAGAAACGGAAAGTTAGCAACAGTCGAGCT
TTTACCATGATTTTAATCCTGCTGCAAGTTCTTGGTATCCTTGGCCGTGG
AGTGTTGGCCCAGAAAAGCTCGCCCATTGCCAACTGGCACATGGCTGATC
CGCACTACACAAGTGACCAGTACGCCAAAATTCTGGGCGAAGCGGGTCTG
GGCCAGGATGCCGATGACAAGGAGCACAAGGGTCTGGGTCCCATGCAAAT
CCAGTACGTGGACTACCAGCCAAACTGCCAGCCGGGCGGAGTGCCAGTCT
GTGCCACCAATGGAACCGATAGCTTCTACTTCGAGAATCATTGCCGTTTG
GAGGCGGCCAACATGAAGATGCTCTTCCAGCACGGCACAGAACTGGAGCC
CACGGAGATGGAGCGATGCCTGCCCAACTGCCAGACGATGAAGTGCACCC
AGGTTGAGCGTCCAGTTTGCGCGCTGGCCGAGATTGGAGGAGCTATTCCA
CAAACATTCGCCAACGAGTGCGAAATGCGAAAACACGAATGCCACACGAA
ACAAGTCCTGAGAATCCTGCACACTGGTCCTTGTCAGACTCCAACCAAAA
GTGGGCGCAAAAAGAAGCTGCGTCGCAACAAGAAAAAGCGACCAACACTC
AACGCCTCAATTTCAAAGTTTGCTACCATTCCGAAGAAAGTATACATAAT
GCTGGCCACTCCTGCTCCTAGGAGCAGCAGCACCACGCCCAGGCCCTTCT
TCAGCACAACCACTACCCGAATCACGACGACGGCCAGGATGAGGCCCACC
AAACCGACCAGCACAAGTCCCTCGCCCATGCGATTCCAGCAGCTGATGAA
CGTGGCTAATCCCATGGTTTCCGTTTCCCAGGCTATAGATGCCTATAATG
TATACATATACCCGATGTGGGTCACGATTACGGCGAGATACCGACTCCTC
GCTCTCGATGTTTTGCCAGAGTTGGTCGTGTCACAGAGCCCTATTCCGTG
CCCCTAGACCACGACCAAACTACCAGCACCCACTAGGGCCACCACCACAT
CCACCAAACGCAAAGCCAGTTTGCCAATCAGGATCATCACTCCTTGGACA
CAGACACTTGCAA
FMO09756.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12716-RA | 1359 | CG12716-RA | 1..1099 | 9..1095 | 5160 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12974988..12975496 | 1056..554 | 2150 | 98.4 | Minus |
| X | 23542271 | X | 12975850..12976236 | 390..4 | 1920 | 99.7 | Minus |
| X | 23542271 | X | 12975557..12975724 | 555..388 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:54:23 has no hits.
FMO09756.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:56 Download gff for
FMO09756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12716-RA | 1..1117 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:46:51 Download gff for
FMO09756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12716-RA | 1..1117 | 9..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:42 Download gff for
FMO09756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12716-RA | 1..1117 | 9..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:42 Download gff for
FMO09756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12974925..12975494 | 556..1111 | 96 | <- | Minus |
| X | 12975557..12975721 | 391..555 | 100 | <- | Minus |
| X | 12975850..12976239 | 1..390 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:46:51 Download gff for
FMO09756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12868958..12869527 | 556..1111 | 96 | <- | Minus |
| arm_X | 12869590..12869754 | 391..555 | 100 | <- | Minus |
| arm_X | 12869883..12870272 | 1..390 | 99 | | Minus |
