FMO09768.5prime Sequence
374 bp (374 high quality bases) assembled on 2010-10-20
> FMO09768.5prime
CAGTCGACATGTTCAAATACGCTGTCGTCGTTCTCGCTCTCGTTGCCTGC
GCTGCTGCCAAGCCTGGACTCCTGGGTGCTCCCCTTGCTTACACTGCTCC
TCTGGCTTACTCTGCTCCTGCTGCCGTGGTAGCTGCTCCCGCTCCAGTTG
TGACCGCAACCAGTAGCCAGGTCATCGCCAGGAATTACAATGGAATCGCC
GCTGCTCCTGTGATTGCTCCCGTTGCTGCTCCTCTGGCTGCTCCTGTGGT
GGCGAAGTACGCGGCTACTCCTCTGGCTGCACCACTGGCCTACTCCTCTC
CTTTGGCTTACTCCGCACCACTGAGCTACGCCGCTGCTTCAGGACCGCTC
CTTATCGCAAGCTTTCTAGACCAT
FMO09768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32214-RC | 756 | CG32214-RC | 54..402 | 8..356 | 1745 | 100 | Plus |
| CG32214-RB | 465 | CG32214-RB | 54..402 | 8..356 | 1745 | 100 | Plus |
| 825-Oak-RB | 514 | CG32208-RB | 51..323 | 8..280 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19467471..19467806 | 21..356 | 1680 | 100 | Plus |
| 3L | 28110227 | 3L | 19471847..19472106 | 280..21 | 1300 | 100 | Minus |
| 3L | 28110227 | 3L | 19475961..19476220 | 21..280 | 1270 | 99.2 | Plus |
| 3L | 28110227 | 3L | 19472620..19472844 | 31..237 | 700 | 88.4 | Plus |
| 3L | 28110227 | 3L | 19475223..19475447 | 237..31 | 700 | 88.4 | Minus |
| 3L | 28110227 | 3L | 19466728..19466952 | 237..31 | 685 | 88 | Minus |
| 3L | 28110227 | 3L | 19472858..19472990 | 224..356 | 530 | 93.2 | Plus |
| 3L | 28110227 | 3L | 19476204..19476317 | 225..338 | 510 | 96.5 | Plus |
| 3L | 28110227 | 3L | 19471750..19471863 | 338..225 | 510 | 96.5 | Minus |
| 3L | 28110227 | 3L | 19423906..19424044 | 80..218 | 485 | 89.9 | Plus |
| 3L | 28110227 | 3L | 19478430..19478568 | 80..218 | 485 | 89.9 | Plus |
| 3L | 28110227 | 3L | 19423002..19423298 | 333..46 | 415 | 78.3 | Minus |
| 3L | 28110227 | 3L | 19486803..19486968 | 355..189 | 410 | 84.4 | Minus |
| 3L | 28110227 | 3L | 19488102..19488245 | 80..232 | 295 | 81 | Plus |
| 3L | 28110227 | 3L | 19488045..19488123 | 41..119 | 275 | 89.9 | Plus |
| 3L | 28110227 | 3L | 19424757..19424836 | 133..212 | 265 | 88.8 | Plus |
| 3L | 28110227 | 3L | 19477672..19477760 | 356..268 | 265 | 86.5 | Minus |
| 3L | 28110227 | 3L | 19464433..19464518 | 217..132 | 205 | 82.6 | Minus |
| 3L | 28110227 | 3L | 19478373..19478428 | 41..96 | 205 | 91.1 | Plus |
| 3L | 28110227 | 3L | 19423849..19423904 | 41..96 | 190 | 89.3 | Plus |
Blast to na_te.dros performed 2014-11-26 14:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2999 | 250..22 | 152 | 57.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2891 | 151..34 | 151 | 60.2 | Minus |
FMO09768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:30 Download gff for
FMO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 825-Oak-RB | 48..325 | 1..282 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:30 Download gff for
FMO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32214-RB | 51..408 | 1..364 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:28 Download gff for
FMO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32214-RB | 51..408 | 1..364 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:28 Download gff for
FMO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19467471..19467812 | 21..364 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:30 Download gff for
FMO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19460571..19460912 | 21..364 | 98 | | Plus |
