FMO09771.5prime Sequence
746 bp (746 high quality bases) assembled on 2010-10-20
> FMO09771.5prime
CAGTCGACATGAGTAGAGTTATTAATGGCTTTAAAAGTGCTGTAAAAGCT
ACAAATTATACACCGCTTGTTAGAAATGCAGCACAATTTAATCAATTCCA
GTTGCCAGAAATACGGAAATTTTCAGTTGAATCTTCGCCGGCTTGTTGGA
ATTGCCAAAAGAAATCGGAATTAAAGCAGAATATGATATGTTCGGACTGT
GGACACTTGCAGGATGTTAACTCAGGAATAAATTACTTTAAACTGCTCAG
CTTTCCCATTCAATTTTCTTTGGAGTCCCAGAAGTTGACAAGAAGTTTTC
GCCAGTTGCAGACCATTGTGCATCCCGATAAATATAGTAATAAAACCTCA
CGGGAGCAAACAAACTCCTCAGACTGGAGTTCCCTCATCAACAAGGCATA
TAAAACGCTTTCCACGCCCATAGATCGTGGTCAGTACCTTCTTCAACTGG
AGGGCGAACAGATGCCGCAGGATAATAGCGCTCTTAACAAAGAGTTTCTC
ATGGCCATGATGGAGCGGAACGAGGAGGTGGAGGATGCGGAAGACACCCA
AACGCTGGAGAATTTAAATATTCAGCTCATCAAGGAACTGGAGGAGATGG
CCCGGAAGTTAAATGCCCTTTTCGATAGCAAAGATCTTTCGGGAGTCAAA
GAAACCCTCGTAGAGATGAAGTACCTGCTGAGTATTCAGAACAGCATTAA
ACAGAAGCAACAAAGTTTGCTGGGCAGCGCAAGCTTTCTAGACCAT
FMO09771.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc20-RA | 927 | CG34246-RA | 70..789 | 9..728 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16233643..16234027 | 344..728 | 1925 | 100 | Plus |
| 3L | 28110227 | 3L | 16233196..16233417 | 9..230 | 1110 | 100 | Plus |
| 3L | 28110227 | 3L | 16233470..16233582 | 231..343 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:51:54 has no hits.
FMO09771.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:32 Download gff for
FMO09771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34246-RA | 70..799 | 3..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:36 Download gff for
FMO09771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc20-RA | 63..795 | 3..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:34 Download gff for
FMO09771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc20-RA | 63..795 | 3..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:34 Download gff for
FMO09771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16233470..16233582 | 231..343 | 100 | -> | Plus |
| 3L | 16233189..16233417 | 3..230 | 98 | -> | Plus |
| 3L | 16233643..16234033 | 344..736 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:36 Download gff for
FMO09771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16226570..16226682 | 231..343 | 100 | -> | Plus |
| arm_3L | 16226743..16227133 | 344..736 | 98 | | Plus |
| arm_3L | 16226289..16226517 | 3..230 | 98 | -> | Plus |
