FMO09777.5prime Sequence
476 bp (476 high quality bases) assembled on 2010-10-20
> FMO09777.5prime
CAGTCGACATGGTCTTCCTGAACCTTCCCTTGCTGGTACGGTCCCGTGGT
CCGGACGAATTCTGGCGGAAGAGACGCATCTTCAAGCTGGCAGCGCATTA
TAGAAGCCGCACTCGCAATGTCTACTCCTTCGCCATCCGGAGTGTCCATA
GGGCACTGGCCTATGCCACCAAGGGGCGAAAGCTAAAGAAACTGGACATG
GCGCAACTGTGGAGCACACGCGTGGAGGCGGGTTGTCAGCAGTATGGAGT
AGGTCTGGAAACCTTCAAAGAGGGCCTCGCGCGCTCCGATATTCTGCTCA
ACAAAAAAGTCCTATCCGACCTCGCCATTTGGGAGCCGCGATCTTTTGAA
GCTCTAGTAAAGATCTCTCGAGAGCGGGCAGCTGTGGAGGGAATGCCAGA
CATCAAACGGAGATCGGCATTTAACCAGGTCTATGGACTGAGCAACCTGA
AGTTGGATGCAAGCTTTCTAGACCAT
FMO09777.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL20-RA | 602 | CG11258-RA | 105..555 | 8..458 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13017404..13017613 | 304..95 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 13017196..13017349 | 458..305 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 13017676..13017763 | 95..8 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:52:12 has no hits.
FMO09777.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:35 Download gff for
FMO09777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL20-RA | 66..524 | 1..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:45 Download gff for
FMO09777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL20-RA | 100..558 | 1..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:43 Download gff for
FMO09777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL20-RA | 100..558 | 1..462 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:43 Download gff for
FMO09777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13017676..13017766 | 1..95 | 95 | | Minus |
| 3L | 13017193..13017349 | 305..462 | 98 | <- | Minus |
| 3L | 13017404..13017612 | 96..304 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:45 Download gff for
FMO09777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13010293..13010449 | 305..462 | 98 | <- | Minus |
| arm_3L | 13010504..13010712 | 96..304 | 100 | <- | Minus |
| arm_3L | 13010776..13010866 | 1..95 | 95 | | Minus |
